View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_low_30 (Length: 249)
Name: NF16804_low_30
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14490243 - 14490480
Alignment:
| Q |
1 |
tttgaagacaataaattatgaaaattcacgcactgtaactgttttaagtagtaactttcagaatttcatgtttcttttgaaaatctctctcaaacctaaa |
100 |
Q |
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| T |
14490243 |
tttgaagacaataaattatgaaaattcacgcactgtaactgttttaagtagtaactttcagaatttcatgtttcttttgaaaatctctctcaaacctaaa |
14490342 |
T |
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| Q |
101 |
catgtcaaaaacatcatacaacaaatcatttatcattaacaaattattccacccaattaaagatcaatacaagagattttccttcaaaatcatataacac |
200 |
Q |
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| T |
14490343 |
caagtcaaaaacatcatacaacaaatcatttatcattaacaaattattccacccaattaaagatcaatacaagagattttccttcaaaatcatataacac |
14490442 |
T |
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| Q |
201 |
aaaagaatcataaaaataaggcatgtccatataattct |
238 |
Q |
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| T |
14490443 |
aaaagaatcataaaaataaggcatgtccatataattct |
14490480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 44510467 - 44510405
Alignment:
| Q |
148 |
tccacccaattaaagatcaatacaagagattttccttcaaaatcatataacacaaaagaatca |
210 |
Q |
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| T |
44510467 |
tccacccaattgaagatcaacacaagagatttcccttcaaaatcatataacacagtagaatca |
44510405 |
T |
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