View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_low_35 (Length: 223)
Name: NF16804_low_35
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 44901194 - 44901000
Alignment:
| Q |
21 |
tgtggatctcaattactctcctacggtcttcttccaccacctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaa |
120 |
Q |
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| T |
44901194 |
tgtggatctcaattactctcctacggtcttcttccaccacctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaa |
44901095 |
T |
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| Q |
121 |
ataagcctttctagttttgaagttatttaaaccggttttcttgtgttgtgatgatcttggtgatttgccacctgttccctcttctgtgctgctcc |
215 |
Q |
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| T |
44901094 |
ataagcctttctagttttgaagttatttaaaccggttttcttgcgttgtgatgatcttggtgatttgccacctgttccctcttctatggtgctcc |
44901000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 44892505 - 44892361
Alignment:
| Q |
57 |
ccacctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaaataagcctttctagttttgaagttatttaaaccggt |
156 |
Q |
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| T |
44892505 |
ccacctcatttattacccctttaaaccaatcaaagaaaccttgttcaccagccatccagtaaaaataagcctttctagttttaaagttactcaaatcagt |
44892406 |
T |
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| Q |
157 |
tttcttgtgttgtgatgatcttggtgatttgccacctgttccctc |
201 |
Q |
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| T |
44892405 |
tttcttgtgttctgatggtcttgatgatttaccaattgttccctc |
44892361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 44917937 - 44917764
Alignment:
| Q |
28 |
ctcaattactctcctacggtcttcttccaccacctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaaataagcc |
127 |
Q |
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| T |
44917937 |
ctcaattactcccctatgatcatcttcagccacctcattcattactcctttaaaccaatcaaatgaaccctgttctctagtaacccagtaaaaataagcc |
44917838 |
T |
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| Q |
128 |
tttctagttttgaagttatttaaaccggttttcttgtgttgtgatgatcttggtgatttgccacctgttccctc |
201 |
Q |
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| T |
44917837 |
ctcttagttttaaagctattcaaaccggttctcttgtgttgtgatggtctcggtgatttactacttgttccctc |
44917764 |
T |
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