View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_low_4 (Length: 568)
Name: NF16804_low_4
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_low_4 |
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| [»] scaffold0703 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 16862687 - 16862349
Alignment:
| Q |
1 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16862687 |
acataatagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
16862588 |
T |
|
| Q |
101 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagattaacacgggtaggaaggcattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16862587 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagattaacacgggtaggaaggcattga |
16862488 |
T |
|
| Q |
201 |
tgagcaagacgccaaagaaaggaacaaacacgtggtggaattttcatgttccagagagtcttccatgggggattagatggcgcatgagtggatgaatgta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
16862487 |
cgagcaagacgccaaagaaaggaacaaacacgtggtggaattttcatgttccagagagtcatccatgggggattagatggcacatgagtggatgaatgta |
16862388 |
T |
|
| Q |
301 |
gaagatcagcgcaaatgcgataagcggactttacggtgt |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
16862387 |
gaagatcagcgcaaatgcgataagcggactttacggtgt |
16862349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 313 - 647
Alignment:
| Q |
1 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
313 |
acatagtagtaaaatcattagcccgatgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
412 |
T |
|
| Q |
101 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagattaacacgggtaggaaggcattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
413 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatgatatacccctggtggtgagattaacacgggtaggaaggcattga |
512 |
T |
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| Q |
201 |
tgagcaagacgccaaagaaaggaacaaacacgtggtggaattttcatgttccagagagtcttccatgggggattagatggcgcatgagtggatgaatgta |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
513 |
tgagcaagacgccaaaggaaggaacaaacacgtggtggaattttcatgttccagagagt----catgggggattagatggcgcatgagtggatgaatgta |
608 |
T |
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| Q |
301 |
gaagatcagcgcaaatgcgataagcggactttacggtgt |
339 |
Q |
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| T |
609 |
gaagatcagcgcaaatgcgataagcggactttacggtgt |
647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 12459421 - 12459755
Alignment:
| Q |
1 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12459421 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
12459520 |
T |
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| Q |
101 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagattaacacgggtaggaaggcattga |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12459521 |
tagatgcatgtgtgattctgccaatgattcacacatcacacacgtatcatcgcatgatatacccctggtggtgagattaacacgggtaggaaggcattga |
12459620 |
T |
|
| Q |
201 |
tgagcaagacgccaaagaaaggaacaaacacgtggtggaattttcatgttccagagagtcttccatgggggattagatggcgcatgagtggatgaatgta |
300 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12459621 |
tgagcaagacgccaaaggaaggaacaaacacgtggtggaattttcatgttccagagagt----catgggggattagatggcgcatgagtggatgaatgta |
12459716 |
T |
|
| Q |
301 |
gaagatcagcgcaaatgcgataagcggactttacggtgt |
339 |
Q |
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| T |
12459717 |
gaagatcagcgcaaatgcgataagcggactttacggtgt |
12459755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 14648067 - 14647851
Alignment:
| Q |
1 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
100 |
Q |
| |
|
|||||| ||| ||||||||||| | || |||||||| ||||| || ||||||| |||| |||||||||| |||||||| || | || |||||||| |
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| T |
14648067 |
acatagaagtgaaatcattagcttgttggagcagctcacgaatttgatttcccatcccaatatgatcccaacattccatagccttggaacaaacaaagaa |
14647968 |
T |
|
| Q |
101 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagattaacacgggtaggaaggcattga |
200 |
Q |
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|| ||||| || ||| || | |||||||||||| ||||||| ||| || ||||| || || || ||| ||||||| || ||||| | |||||| |
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| T |
14647967 |
aaggtgcatgtgaatttcagctagtgattcacacataacacacgaatcgtcacatggaatgcctctcgtgttgagatttgtgcgtgtaggcaagcattgg |
14647868 |
T |
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| Q |
201 |
tgagcaagacgccaaag |
217 |
Q |
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||||||||||| ||||| |
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| T |
14647867 |
tgagcaagacgtcaaag |
14647851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 53986507 - 53986663
Alignment:
| Q |
1 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53986507 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
53986606 |
T |
|
| Q |
101 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatgg |
157 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
53986607 |
tagatgcatgtgtgattctgccaatgattcacacatcacacacatatcatcgcatgg |
53986663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 341 - 550
Target Start/End: Original strand, 5820175 - 5820384
Alignment:
| Q |
341 |
aatattgttaatattctagaaagtcaaacaaatattcattttctagaaaaggagcatttcgttgctaaaattagatgttgcatgtaagcaagcatgcatt |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5820175 |
aatattgttaatattctagaaagtcaaacaaatattcattttctagaaaaggagcatttcgttgctaaaattagatgttgcatgtaagcaagcatgcatt |
5820274 |
T |
|
| Q |
441 |
aatattgaatctctatttcatcacaccaaactcttgtcagnnnnnnnnnnnnnnnnnnnnnacgtaaagaaggttacgtaccctcctaaacctaaatcca |
540 |
Q |
| |
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||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5820275 |
aatgtcgaatctctatttcatcacaccaaactcttgtcagttttttctttctttcttttctacgtaaagaaggttacgtaccctcctaaacctaaatcca |
5820374 |
T |
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| Q |
541 |
ttagccatgg |
550 |
Q |
| |
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|||||||||| |
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| T |
5820375 |
ttagccatgg |
5820384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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