View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16804_low_5 (Length: 524)

Name: NF16804_low_5
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16804_low_5
NF16804_low_5
[»] chr3 (26 HSPs)
chr3 (228-515)||(22368070-22368357)
chr3 (228-515)||(22468091-22468393)
chr3 (228-515)||(22630581-22630884)
chr3 (232-515)||(22358145-22358443)
chr3 (228-515)||(22442882-22443184)
chr3 (244-515)||(22353954-22354242)
chr3 (231-515)||(22635646-22635945)
chr3 (246-515)||(22431316-22431578)
chr3 (228-332)||(22632206-22632310)
chr3 (231-398)||(22436909-22437076)
chr3 (246-404)||(22458758-22458916)
chr3 (246-404)||(22481739-22481897)
chr3 (424-515)||(22458632-22458723)
chr3 (424-515)||(22481613-22481704)
chr3 (27-74)||(22437914-22437961)
chr3 (32-124)||(22439904-22439998)
chr3 (179-232)||(22359155-22359208)
chr3 (179-232)||(22369057-22369110)
chr3 (34-70)||(22449356-22449392)
chr3 (459-515)||(30989448-30989504)
chr3 (265-364)||(21945682-21945781)
chr3 (232-311)||(22615621-22615700)
chr3 (265-323)||(2818650-2818708)
chr3 (230-364)||(21937176-21937310)
chr3 (262-323)||(2797451-2797512)
chr3 (434-515)||(22115327-22115408)
[»] chr4 (1 HSPs)
chr4 (454-515)||(29610710-29610771)
[»] chr8 (1 HSPs)
chr8 (265-313)||(27294606-27294654)
[»] chr1 (1 HSPs)
chr1 (262-362)||(34980217-34980317)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 228 - 515
Target Start/End: Complemental strand, 22368357 - 22368070
Alignment:
Q  228 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 327  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  22368357 agagggaagagcacaccgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggtcgtt 22368258  T
Q  328 aaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatactgcaacaagggaaaggtcctcctcaaa 427  Q
    ||||| ||||| |||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22368257 aaacactttgattgtcgtttatggatcacggtttctcgaccatataataaagaaaaattgctgaaggacatactgcaacaagggaaatgtcctcctcaaa 22368158  T
Q  428 gtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22368157 gtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtacgttgtagtgtttgatgatgt 22368070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 228 - 515
Target Start/End: Complemental strand, 22468393 - 22468091
Alignment:
Q  228 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 327  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  22468393 agagggaagagcagagcgcaccgttgtctccatagttggaatgggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaaggtcgtt 22468294  T
Q  328 aaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatactg---------------caacaaggga 412  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||| ||  ||               |||||||||     
T  22468293 aaacattttgattgtcatgtatggatcacggtgtctcgaccatacaatatagaaaaattgttgagggaaattttgctcgatatttacaaacaacaagggg 22468194  T
Q  413 aaggtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatga 512  Q
    ||| ||||||||| ||||| ||||| |||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22468193 aagatcctcctcagagtctccatcagatggatcgaaagccattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttatagtgtttgatga 22468094  T
Q  513 tgt 515  Q
    |||    
T  22468093 tgt 22468091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 228 - 515
Target Start/End: Complemental strand, 22630884 - 22630581
Alignment:
Q  228 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 327  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| ||||||||||    
T  22630884 agagggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactcttgccaagaaaatttttgacaaccgaaaggtcgtt 22630785  T
Q  328 aaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatactg---------------caacaaggga 412  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||| |||| ||||| |||| ||| ||||||  ||               ||||||||||    
T  22630784 aaacactttgattgtcatgaatggatcacggtgtctcgaccatacaatatagaaacattgttgagggacattttgctcgagatttacaaacaacaaggga 22630685  T
Q  413 aaggtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatg-ttgtagtgtttgatg 511  Q
    ||| ||||||||||||||| |||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  22630684 aagatcctcctcaaagtctccatcaaatggatcgaaagccattagttgatgaagtgagaaactacttgcaaggaaaaaggtacgtttgtagtgtttgatg 22630585  T
Q  512 atgt 515  Q
    ||||    
T  22630584 atgt 22630581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 232 - 515
Target Start/End: Complemental strand, 22358443 - 22358145
Alignment:
Q  232 ggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaac 331  Q
    ||||||||| | || ||| |||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||| ||||    
T  22358443 ggaagagcagaccggacaattgtctccattgttggaatgggaggactgggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaac 22358344  T
Q  332 attttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatactg---------------caacaagggaaagg 416  Q
    | |||||  ||| ||||||||| ||||||||||||||||| |||| ||||||| || ||| ||||||  ||               |||||| ||||||     
T  22358343 actttgatcgtcgtgtatggattacggtgtctcgaccatacaatacagaaaaagtgttgagggacattatgctcgagttttacaaacaacaaaggaaagt 22358244  T
Q  417 tcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 515  Q
    ||||||||| ||||| | |||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22358243 tcctcctcagagtctccgtcaaatggatcgacagtcattagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatgatgt 22358145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 228 - 515
Target Start/End: Complemental strand, 22443184 - 22442882
Alignment:
Q  228 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 327  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||   || ||||||||||||||||||| |||    
T  22443184 agagggaagagaagaccgcacagttgtctccattgttggaatgggaggattgggaaaaaccactctagccagacaaatttttgacaaccaaaaggtagtt 22443085  T
Q  328 aaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatactgc---------------aacaaggga 412  Q
    || || |||||||||| | ||||||||| |||||||| | |||  ||||  |||||| || ||| ||||||  |||               ||||| |||    
T  22443084 aagcactttgactgtcttttatggatcatggtgtctcaatcattcaatattgaaaaagtgttgagggacattatgctcgagttttacaaacaacaaagga 22442985  T
Q  413 aaggtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatga 512  Q
    ||| ||||||||| ||||| |||||||||||| || ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22442984 aagttcctcctcagagtctccatcaaatggatcgacagtcattagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatga 22442885  T
Q  513 tgt 515  Q
    |||    
T  22442884 tgt 22442882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 244 - 515
Target Start/End: Complemental strand, 22354242 - 22353954
Alignment:
Q  244 cgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtc 343  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||||| |||||  | ||||| |||     
T  22354242 cgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccagaaaagtttttgacaaccaaaaggtagttaagaactttgattgtt 22354143  T
Q  344 atg--tatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatactg---------------caacaagggaaaggtcctcctcaa 426  Q
    |||  ||||||||||||| ||||||||||| || | ||||||| || ||| ||||||  ||               |||| | |||||| |||||||||     
T  22354142 atgtatatggatcacggtatctcgaccatacaacatagaaaaagtgttgagggacattttgctggagatttacaaacaacgaaggaaagatcctcctcag 22354043  T
Q  427 agtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 515  Q
    ||||| |||||||||||| |||||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  22354042 agtctccatcaaatggatcgaaagccattagttgatgaagtgagaaacaacttgcaaggaaaaaggtacgttgtagtgtttgataatgt 22353954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 231 - 515
Target Start/End: Complemental strand, 22635945 - 22635646
Alignment:
Q  231 gggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaa 330  Q
    |||||||||| | || ||| ||||||||||  |||||||||||||||  ||||||| |||||| || ||||||||||||||||||| ||||||||| |||    
T  22635945 gggaagagcagaccggacaattgtctccatctttggaatgggaggacaaggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaa 22635846  T
Q  331 cattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatactg---------------caacaagggaaag 415  Q
     | ||||| |||| ||||||||| ||||||||||||||||| |||| ||||||| || ||   |||||  ||               ||||||||| |||    
T  22635845 tactttgattgtcgtgtatggattacggtgtctcgaccatacaatacagaaaaagtgttgcgagacattatgctcgagttttacaaacaacaaggggaag 22635746  T
Q  416 gtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 515  Q
     ||||||| | ||||| |||||||||||| |||||| |||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  22635745 ttcctcctgagagtctccatcaaatggatcgaaagtcattagttgatgaagtgagaaaccactttcaaggaaaaaggtatgttttagtgtttgatgatgt 22635646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 246 - 515
Target Start/End: Complemental strand, 22431578 - 22431316
Alignment:
Q  246 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 345  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||||||||| | | |||| ||||||| ||||| |||| |    
T  22431578 cacagtggtctccattgt-ggaatgggaggactgggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgt 22431480  T
Q  346 gtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatactgcaacaagggaaaggtc-ctcctcaaagtcttcatcaaatggat 444  Q
     |||||||||| ||||||| ||||||| ||| |||||||||| || || | ||  ||| |||||    | |||  |||      || || ||||||||||    
T  22431479 ttatggatcacagtgtctcaaccatatgatatagaaaaattgttgcagaaaatgttgc-acaagtttgaagtcgatcc------tcctcctcaaatggat 22431387  T
Q  445 ggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 515  Q
     |||| |||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22431386 cgaaacttattacttgataaactgagaaactacttgcaaggaaaaaggtacgttgtagtgtttgatgatgt 22431316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 22632310 - 22632206
Alignment:
Q  228 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 327  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| |||||    
T  22632310 agagggaagagcagatcgcacagttgtctccattattggaatgggaggactggggaaaaccactctagccaagaaagtttttgacaaccgaaagatcgtt 22632211  T
Q  328 aaaca 332  Q
    |||||    
T  22632210 aaaca 22632206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 398
Target Start/End: Complemental strand, 22437076 - 22436909
Alignment:
Q  231 gggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaa 330  Q
    |||||||| | ||||  |||||||||| ||||| ||||||||||| |  |||||||  ||||| ||||||||||||||||| |||   || ||| | |||    
T  22437076 gggaagagtagagcgtgcagttgtctctattgtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaa 22436977  T
Q  331 cattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacat 398  Q
    || ||||||||||||||||||||||| ||||||| | |||| | ||||||||||||| ||| ||||||    
T  22436976 caatttgactgtcatgtatggatcacagtgtctcaatcatacagtaaagaaaaattgttgagggacat 22436909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 404
Target Start/End: Complemental strand, 22458916 - 22458758
Alignment:
Q  246 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 345  Q
    |||| ||||| |||||||||||| ||||||||  |||||||  |||||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||    
T  22458916 cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcat 22458817  T
Q  346 gtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatactgca 404  Q
    ||||||||||  ||||||| | |||| |||| ||||   ||||||| |||||| |||||    
T  22458816 gtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatgctgca 22458758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 404
Target Start/End: Complemental strand, 22481897 - 22481739
Alignment:
Q  246 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 345  Q
    |||| ||||| |||||||||||| ||||||||  |||||||  |||||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||    
T  22481897 cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcat 22481798  T
Q  346 gtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatactgca 404  Q
    ||||||||||  ||||||| | |||| |||| ||||   ||||||| |||||| |||||    
T  22481797 gtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatgctgca 22481739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 424 - 515
Target Start/End: Complemental strand, 22458723 - 22458632
Alignment:
Q  424 caaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 515  Q
    |||||| ||||||||||| || || ||| ||| |||||||||||||| ||||||||||| | ||||||||||||| |||| |||||||||||    
T  22458723 caaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt 22458632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 424 - 515
Target Start/End: Complemental strand, 22481704 - 22481613
Alignment:
Q  424 caaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 515  Q
    |||||| ||||||||||| || || ||| ||| |||||||||||||| ||||||||||| | ||||||||||||| |||| |||||||||||    
T  22481704 caaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt 22481613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 22437961 - 22437914
Alignment:
Q  27 acacttcacattgcatagccaattgcccattcaaagctaaattattta 74  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  22437961 acacctcacattgcatagccaattgcccattcaaaactaaattattta 22437914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 22439998 - 22439904
Alignment:
Q  32 tcacattgcatagccaattgcccattcaaagc-----taaattatttaactagttagatgaatgatctgaagagctgggtatcttatctattccgaat 124  Q
    |||||||||||||||||||| | ||||||| |     ||||||||||||||||| ||||||||||||  ||||||| ||| |||||||||||||||||    
T  22439998 tcacattgcatagccaattggcgattcaaaactaatttaaattatttaactagtgagatgaatgatc--aagagct-ggtgtcttatctattccgaat 22439904  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 22359208 - 22359155
Alignment:
Q  179 ttgatttttatgctgtcaaggtactcaataaaatatttaacaatgacagagagg 232  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  22359208 ttgatatttatgctgtcaagttactcaataaaatatttgacaatgatagagagg 22359155  T

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Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 22369110 - 22369057
Alignment:
Q  179 ttgatttttatgctgtcaaggtactcaataaaatatttaacaatgacagagagg 232  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  22369110 ttgatatttatgctgtcaagttactcaataaaatatttgacaatgatagagagg 22369057  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 22449356 - 22449392
Alignment:
Q  34 acattgcatagccaattgcccattcaaagctaaatta 70  Q
    |||||||||||||||||||||||||||| ||||||||    
T  22449356 acattgcatagccaattgcccattcaaaactaaatta 22449392  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 30989504 - 30989448
Alignment:
Q  459 tgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 515  Q
    |||||||||||||||||||||||    |||||||||||| || ||||||||||||||    
T  30989504 tgatgaagtgagaaactacttgcggttaaaaaggtatgtcgttgtgtttgatgatgt 30989448  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 364
Target Start/End: Original strand, 21945682 - 21945781
Alignment:
Q  265 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctc 364  Q
    ||||||||||| |  ||||||| |||||| ||||||||||||||||||| | |  | ||| ||  ||| ||||| |||| |||||||||||| |||||||    
T  21945682 ggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaaggatgtcatttgacactttgattgtcttgtatggatcactgtgtctc 21945781  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 22615700 - 22615621
Alignment:
Q  232 ggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttga 311  Q
    ||||||| | ||||||| ||||||||  | || ||||||||||| | ||| |||| ||||||||||||||| ||||||||    
T  22615700 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttga 22615621  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 2818650 - 2818708
Alignment:
Q  265 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggt 323  Q
    |||||||| || || ||||||| |||||||||||||  ||||||||||| |||||||||    
T  2818650 ggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaaggt 2818708  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 364
Target Start/End: Original strand, 21937176 - 21937310
Alignment:
Q  230 agggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaa 329  Q
    ||||||| ||| ||||||| ||||| ||  | || ||||||||||| |  ||||||| |||||| || ||||||| |||||||| | |  | ||||||      
T  21937176 agggaagggcagagcgcactgttgtttctgtggtaggaatgggagggcaaggaaaaaccactctagctaagaaagcttttgacagcaaggatgtcgttgg 21937275  T
Q  330 acattttgactgtcatgtatggatcacggtgtctc 364  Q
    ||| ||||| |||| |||||||||||| |||||||    
T  21937276 acactttgattgtcgtgtatggatcacagtgtctc 21937310  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 2797451 - 2797512
Alignment:
Q  262 gttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggt 323  Q
    |||||||||||||| || ||||||| |||||||||||||  |||||| ||||  ||||||||    
T  2797451 gttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggt 2797512  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 515
Target Start/End: Original strand, 22115327 - 22115408
Alignment:
Q  434 atcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 515  Q
    ||||||||||| ||   ||||||  ||||||||||||||| ||||||||   ||| ||||| ||||| ||||||||||||||    
T  22115327 atcaaatggatcgaggattattaactgatgaagtgagaaaatacttgcagaaaaagaggtacgttgtcgtgtttgatgatgt 22115408  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 29610771 - 29610710
Alignment:
Q  454 ttagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 515  Q
    ||||| |||||||||||||| |||||||| |  ||||||||  ||||||||||||| |||||    
T  29610771 ttagtcgatgaagtgagaaattacttgcaggagaaaaggtaccttgtagtgtttgacgatgt 29610710  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 27294606 - 27294654
Alignment:
Q  265 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 313  Q
    |||||||||||||  ||||||| |||||| | |||||||||||||||||    
T  27294606 ggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgaca 27294654  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 362
Target Start/End: Original strand, 34980217 - 34980317
Alignment:
Q  262 gttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgt 361  Q
    |||||||||||||| |  |||||||| |||||||| || ||||||||||| | | || |||| ||   ||| ||||| |||| |||||||||||| ||||    
T  34980217 gttggaatgggagggcaaggaaaaataactcttgctaaaaaagtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgt 34980316  T
Q  362 c 362  Q
    |    
T  34980317 c 34980317  T

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