View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_low_6 (Length: 508)
Name: NF16804_low_6
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 12 - 477
Target Start/End: Complemental strand, 20994727 - 20994262
Alignment:
| Q |
12 |
aacacatctaaagctgtctgctgcgcaatgggatagaaatcgtaaaagacagttcctaaactctcttagtttgcctgcattaacacatctaatgctttct |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20994727 |
aacacatctaaagctgtctgctgcgcaatgggatagaaatcgtaaaagacagttcctaaactctcttagtttgcctgcattaacacatctaatgctttct |
20994628 |
T |
|
| Q |
112 |
ggttattcaaatcatgaaaatctgtttccggattctcttgatttaccggcattaactagcttgcaactagagcactttacgttttgtgtcagtggtaaca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20994627 |
ggttattcaaatcatgaaaatctgtttccggattctcttgatttaccggcattaactagcttgcaactagagcactttacgttttgtgtcagtggtaaca |
20994528 |
T |
|
| Q |
212 |
attgcgctgaaccattttctacctttagtaggttgagtagtttgctcatttctgattgtaccgtgaaaggtaaagaaaacctccgcatatcaagtgtgac |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20994527 |
attgcgctgaaccattttctacctttagtaggttgagtagtttgctcatttctgattgtaccgtgaaaggtaaagaaaacctccgcatatcaagtgtgac |
20994428 |
T |
|
| Q |
312 |
gcttgtcaattttactacgtacaatttctcagaagactattacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtattccttat |
411 |
Q |
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|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20994427 |
gcttgtcaattttaccacatacaatttctcagaagactattacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtattccttat |
20994328 |
T |
|
| Q |
412 |
cagagaatcattgggagcaatatttcttctcttaaacatgtagatatccatgcagaagtagattca |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
20994327 |
cagagaatcattgggagcaatatttcttctcttaaacatgtagatattcatgcagaagtaaattca |
20994262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 477
Target Start/End: Complemental strand, 20981568 - 20981118
Alignment:
| Q |
12 |
aacacatctaaagctgtctgctgcgcaatgggatagaaatcgtaaaagacagttcctaaactctcttagtttgcctgcattaacacatctaatgctttct |
111 |
Q |
| |
|
|||||||||| |||| |||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20981568 |
aacacatctacagctttctgttgcgcaaagggatagaaatcttaaaactcagttcctaaactctcttagtttgcctgcattaacacatctaatgctttct |
20981469 |
T |
|
| Q |
112 |
ggttattcaaatcatgaaaatctgtttccggattctcttgatttaccggcattaactagcttgcaactagagcactttacgttttgtgtcagtggtaaca |
211 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20981468 |
ggttattcaaatc---------tgtttccggattctcttgatttaccggcgttaactagcttgcaactagggcactttacgttttgtgtcagtggtaaca |
20981378 |
T |
|
| Q |
212 |
attgcgctgaaccattttctacctttagtaggttgagtagtttgctcatttctgattgtaccgtgaaaggtaaagaaaacctccgcatatcaagtgtgac |
311 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| ||| |
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| T |
20981377 |
attgcgctgaaccattttctaactttagtaggttgagtagtttgctcatttctgattgtaccgtgaaaggtaaa------ctttgtatatcaagtgcgac |
20981284 |
T |
|
| Q |
312 |
gcttgtcaattttactacgtacaatttctcagaagactattacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtattccttat |
411 |
Q |
| |
|
|||||| |||||||| | ||||||| ||| ||||||| ||||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
20981283 |
gcttgttaattttacgatgtacaatcactcggaagacttttacatgattgagctatgcactccaagtctttgtgcgtttacttttaatggtactccttat |
20981184 |
T |
|
| Q |
412 |
cagagaatcattgggagcaatatttcttctcttaaacatgtagatatccatgcagaagtagattca |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
20981183 |
cagagaatcattgggagcaatatttcttctcttaaacatgtagatatccatgcagaaatacattca |
20981118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 358 - 477
Target Start/End: Original strand, 20978050 - 20978169
Alignment:
| Q |
358 |
attgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcagagaatcattgggagcaatatttcttctcttaaacatgtagata |
457 |
Q |
| |
|
||||| ||| || |||||||||||||||| ||||||||| |||||| ||||||||||| || |||| || ||||||||||||||||||||||||||| |
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|
| T |
20978050 |
attgatctacgtgctccaagtctttgtacttttactttttatggtactccttatcagaatatatctgggggcgatatttcttctcttaaacatgtagata |
20978149 |
T |
|
| Q |
458 |
tccatgcagaagtagattca |
477 |
Q |
| |
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| |||||||||||||||||| |
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|
| T |
20978150 |
tgcatgcagaagtagattca |
20978169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 116 - 270
Target Start/End: Original strand, 20977802 - 20977956
Alignment:
| Q |
116 |
attcaaatcatgaaaatctgtttccggattctcttgatttaccggcattaactagcttgcaactagagcactttacgttttgtgtcagtggtaacaattg |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | || || || |||||||| ||| ||| | |
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|
| T |
20977802 |
attcagatcatgaaaatctgtttccggattctcttgatttgccggcattaactagcttgcatctacaacatttcacattttgtgttggtgataatgacca |
20977901 |
T |
|
| Q |
216 |
cgctgaaccattttctacctttagtaggttgagtagtttgctcatttctgattgt |
270 |
Q |
| |
|
|| || ||||||||| |||||| ||||||| |||||||||||||||| ||||| |
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|
| T |
20977902 |
tgccgagccattttctgcctttaacaggttgaatagtttgctcatttctaattgt |
20977956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 25602335 - 25602397
Alignment:
| Q |
353 |
acaagattgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcaga |
415 |
Q |
| |
|
|||| ||||| |||| ||||||||||||| |||| ||||||| |||||||| ||||| ||||| |
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|
| T |
25602335 |
acaaaattgaactatctactccaagtcttcgtacctttacttataatggtagtccttctcaga |
25602397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 348 - 480
Target Start/End: Original strand, 3978705 - 3978837
Alignment:
| Q |
348 |
ctattacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcagagaatcattgggagcaatatttcttctcttaaa |
447 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||| | |||| ||||| |||| |||||||| ||| | |||||||| |||||||||||||||| |
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|
| T |
3978705 |
ctattacgaaattgatttatgtactccaagtctttggaagtttgtttttaccggtactccttatctgagtctatctgggagcagtatttcttctcttaaa |
3978804 |
T |
|
| Q |
448 |
catgtagatatccatgcagaagtagattcaagt |
480 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |
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|
| T |
3978805 |
catgtagatattgatgcagaagtagagtcaagt |
3978837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 408
Target Start/End: Complemental strand, 36636402 - 36636352
Alignment:
| Q |
358 |
attgagctatgtactccaagtctttgtacgtttacttttaatggtattcct |
408 |
Q |
| |
|
|||||| ||||| |||||||||||||||| |||||||||| ||||| |||| |
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|
| T |
36636402 |
attgagttatgtgctccaagtctttgtacctttacttttactggtactcct |
36636352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 36643055 - 36643013
Alignment:
| Q |
361 |
gagctatgtactccaagtctttgtacgtttacttttaatggta |
403 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||| ||||| |
|
|
| T |
36643055 |
gagctatctactccaagtctttgtacatttacttttattggta |
36643013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 3978649 - 3978685
Alignment:
| Q |
292 |
ctccgcatatcaagtgtgacgcttgtcaattttacta |
328 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
3978649 |
ctccgcatatcaagtgtgacccttgtcaatttaacta |
3978685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 358 - 458
Target Start/End: Complemental strand, 7976281 - 7976184
Alignment:
| Q |
358 |
attgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcagagaatcattgggagcaatatttcttctcttaaacatgtagata |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||| | || ||||| || |||||||||||||||||||||||| |
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| T |
7976281 |
attgagctatgtactccaagtctttgtacgtttgcttttatcggtagtcc---tcagaaactctccaggagctatgtttcttctcttaaacatgtagata |
7976185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 458
Target Start/End: Complemental strand, 44500926 - 44500819
Alignment:
| Q |
351 |
ttacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcagagaatcattgggagcaatatttcttctcttaaacat |
450 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||||| |||| ||||| ||||| || |||||||| | ||| |||||| |||||||||||||||| |
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| T |
44500926 |
ttacaacattgatctaagtactccaagtctttgtaagtttgtttttactggtagtcattatcagaatctttctggaagcaatgcttcttctcttaaacat |
44500827 |
T |
|
| Q |
451 |
gtagatat |
458 |
Q |
| |
|
|||||||| |
|
|
| T |
44500826 |
gtagatat |
44500819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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