View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16805_high_5 (Length: 300)
Name: NF16805_high_5
Description: NF16805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16805_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 2287324 - 2287594
Alignment:
| Q |
15 |
cctgtgaaggttcaatgattgttgaagcttttgctggtaaagacacaattaaggtaccttatacatccaaaggtaaaggtggattcaaacgtgcggcgct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2287324 |
cctgtgaaggttcaatgattgttgaagcttttgctggtaaagacacaattaaggtaccttatacatccaaaggtaaaggtggattcaaacgtgcggcgct |
2287423 |
T |
|
| Q |
115 |
taagtttgtagctgttgggacaagaacaagggtgatgtttcttagtactttttatagtatgagaagtgatgatctttcttctctttgtggtcctgttatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2287424 |
taagtttgtagctgttgggacaagaacaagggtgatgtttcttagtactttttatagtatgagaagtgatgatctttcttctctttgtggtcctgttatt |
2287523 |
T |
|
| Q |
215 |
gatgatgtcaagttgcttagcgtgcgtaaaccataaggcgatgagagttccttttcctaccctatgaattt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2287524 |
gatgatgtcaagttgcttagcgtgcgtaaaccataaggcgatgagagttccttttcctaccctatgaattt |
2287594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 44409820 - 44409861
Alignment:
| Q |
193 |
ttctctttgtggtcctgttattgatgatgtcaagttgcttag |
234 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
44409820 |
ttctctttgtggacctgttattgatgatgtaaaattgcttag |
44409861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University