View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16805_low_1 (Length: 767)
Name: NF16805_low_1
Description: NF16805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16805_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 740; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 18 - 757
Target Start/End: Original strand, 42123819 - 42124558
Alignment:
| Q |
18 |
tataacacatgataatgcagctataaaacctgagagaatccaaaagaatggaagtaaccaatggagtggaagttttttgacatccttaaaataaacaacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42123819 |
tataacacatgataatgcagctataaaacctgagagaatccaaaagaatggaagtaaccaatggagtggaagttttttgacatccttaaaataaacaacc |
42123918 |
T |
|
| Q |
118 |
atgtttagaggaacaaaagcagctaaaccaattaccatgtgaggtaaaatagtttgtagtaatggctgaatgaagagtgctgagaatgtttgataccatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42123919 |
atgtttagaggaacaaaagcagctaaaccaattaccatgtgaggtaaaatagtttgtagtaatggctgaatgaagagtgctgagaatgtttgataccatg |
42124018 |
T |
|
| Q |
218 |
ttcttgtcaatgttaatgctggtgtcgctttctttttcagcaatggttctttttcaggtaatggagctgatgatgctattggacagcaggacaagtcaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42124019 |
ttcttgtcaatgttaatgctggtgtcgctttctttttcagcaatggttctttttcaggtaatggagctgatgatgctattggacagcaggacaagtcaac |
42124118 |
T |
|
| Q |
318 |
cttaacattggattgttgtacaaggtttctccaagcttctgggagtggctgtctattgcgcacgtgctgacatatctcatagatcaatgaacggccgtga |
417 |
Q |
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| T |
42124119 |
cttaacattggattgttgtacaaggtttctccaagcttctgggagtggctgtctattgcgcacgtgctgacatatctcatagatcaatgaacggccgtga |
42124218 |
T |
|
| Q |
418 |
tcaattgaagcactttgtgtgctggaagtagctgtaattgtatccaactcattgcttttaagataaggattaaactcaagcttttgtgaatcttccatag |
517 |
Q |
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| T |
42124219 |
tcaattgaagcactttgtgtgctggaagtagctgtaattgtatccaactcattgcttttaagataaggattaaactcaagcttttgtgaatcttccatag |
42124318 |
T |
|
| Q |
518 |
gaatattttcattgaggttaatctctccaacatcagtgaaagggaattcattttcatcccatggtttagtacaatccaatgcaacctcgcggccttgtgt |
617 |
Q |
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| T |
42124319 |
gaatattttcattgaggttaatctctccaacatcagtgaaagggaattcattttcatcccatggtttagtacaatccaatgcaacctcgcggccttgtgt |
42124418 |
T |
|
| Q |
618 |
atcgtctggaactggtcttacttgaatttgaaaaacgtaagaaactccattggaggaactaacacggttttgaaaatcattagcaaggaaaagcaaagga |
717 |
Q |
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| T |
42124419 |
atcgtctggaactggtcttacttgaatttgaaaaacgtaagaaactccattggaggaactaacacggttttgaaaatcattagcaaggaaaagcaaagga |
42124518 |
T |
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| Q |
718 |
cgtgaatcattttcatctctagcaattgcacctgtctctg |
757 |
Q |
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| T |
42124519 |
cgtgaatcattttcatctctagcaattgcacctgtctctg |
42124558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 24928409 - 24928470
Alignment:
| Q |
169 |
gtttgtagtaatggctgaatgaagagtgctgagaatgtttgataccatgttcttgtcaatgt |
230 |
Q |
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|||||||| ||||||||||||||||||| |||||| |||||||||||| ||||||| ||||| |
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| T |
24928409 |
gtttgtagaaatggctgaatgaagagtgatgagaaggtttgataccattttcttgttaatgt |
24928470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 24928258 - 24928310
Alignment:
| Q |
18 |
tataacacatgataatgcagctataaaacctgagagaatccaaaagaatggaa |
70 |
Q |
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|||||||||| | |||||||||| || |||||||||||||||||| ||||||| |
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| T |
24928258 |
tataacacataacaatgcagctaaaacacctgagagaatccaaaacaatggaa |
24928310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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