View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16805_low_11 (Length: 220)
Name: NF16805_low_11
Description: NF16805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16805_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30264382 - 30264171
Alignment:
| Q |
1 |
agctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264382 |
agctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccata |
30264283 |
T |
|
| Q |
101 |
ttctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaaggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30264282 |
ttctcccttttcaattcaatctctgattttggatggagtatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgaggaaggtt |
30264183 |
T |
|
| Q |
201 |
cacaggttctgc |
212 |
Q |
| |
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|| || |||||| |
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| T |
30264182 |
cagagtttctgc |
30264171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 30287806 - 30288017
Alignment:
| Q |
1 |
agctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287806 |
agctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccata |
30287905 |
T |
|
| Q |
101 |
ttctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaaggtt |
200 |
Q |
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| T |
30287906 |
ttctcccttttcaattcaatctctgattttggatggagtatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgaggaaggtt |
30288005 |
T |
|
| Q |
201 |
cacaggttctgc |
212 |
Q |
| |
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|| || |||||| |
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| T |
30288006 |
cagagtttctgc |
30288017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 30304340 - 30304146
Alignment:
| Q |
4 |
tgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattc |
103 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30304340 |
tgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggttcccttcaaccatattc |
30304241 |
T |
|
| Q |
104 |
tcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaagg |
198 |
Q |
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|| |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||| ||||| |
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| T |
30304240 |
ccctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaagg |
30304146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 30271276 - 30271079
Alignment:
| Q |
1 |
agctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccata |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| |||||||||||||| |||||||||||| |
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| T |
30271276 |
agctgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccata |
30271177 |
T |
|
| Q |
101 |
ttctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaagg |
198 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||| ||||| |
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| T |
30271176 |
ttctcctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaagg |
30271079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 30280913 - 30281110
Alignment:
| Q |
1 |
agctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccata |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| |||||||||||||| |||||||||||| |
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|
| T |
30280913 |
agctgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccata |
30281012 |
T |
|
| Q |
101 |
ttctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaagg |
198 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||| ||||| |
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| T |
30281013 |
ttctcctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaagg |
30281110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30032334 - 30032301
Alignment:
| Q |
1 |
agctgatgatccttctcttcctttgtcttttcct |
34 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
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|
| T |
30032334 |
agctgatgatccttctcttcctttatcttttcct |
30032301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 2311456 - 2311488
Alignment:
| Q |
2 |
gctgatgatccttctcttcctttgtcttttcct |
34 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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|
| T |
2311456 |
gctgatgatccatctcttcctttgtcttttcct |
2311488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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