View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16805_low_2 (Length: 760)
Name: NF16805_low_2
Description: NF16805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16805_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 393 - 717
Target Start/End: Original strand, 10714336 - 10714659
Alignment:
| Q |
393 |
aagaagaatctttaattataaatgaaattttttagacattgtcattaaacatgatgaaaaaattattctaaaatttttagagtgagacgatggtaccaca |
492 |
Q |
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| T |
10714336 |
aagaagaatctttaattataaatgacattttttagacattgtcattaaacatgatgaaaaaattattctaaaaattttagagtgagacgatggtaccaca |
10714435 |
T |
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| Q |
493 |
atctatgtaaagaaagactttaccagtaaaaacatttacaaatatatttacatttatcttttttcatgaaaactaatgagactcaaattttaaacctata |
592 |
Q |
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| T |
10714436 |
atccatgtaaagaaagactttactggtaaaaatatttacaaatatattta-attttttttttttcatgaacgctaatgagactcaaattttaaacctata |
10714534 |
T |
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| Q |
593 |
tctttttaccattatattcgatcaacctttccaagtaaattactaattttagtgtgtaccgataaaatttgacaactatcttttggttggaaggcatgat |
692 |
Q |
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| T |
10714535 |
tttttttaccattatattcgatcaacctttccaagtaaattactaattttagtgtgtaccattaaaatttgacaactatcttttggttggaaggcatgat |
10714634 |
T |
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| Q |
693 |
taaacctatatacaccttgaatgat |
717 |
Q |
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| T |
10714635 |
taaacctatatacaccttgaatgat |
10714659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 3 - 323
Target Start/End: Original strand, 10713627 - 10713947
Alignment:
| Q |
3 |
tcgagtgataagaagttgattcatcctctgtaaggctgcgagttcaactcccaatgtcagcgtaaggatctgatgaatagattatctataagcatatcat |
102 |
Q |
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| T |
10713627 |
tcgattgataagaagttgattcatcctctgtaagagtgcgagtttaactcccgatgtcagcgtaaggatttgatggatagattatctataagtatatcat |
10713726 |
T |
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| Q |
103 |
gtgcgctcttagagttttgaaacatagcatgatcatggttagcca-caagatccaactcacttaactttaatgtgtgtgcgtgcgcgtgtaaacaacgct |
201 |
Q |
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| T |
10713727 |
gtgcgctcttagagttttgaaacatagcatgatccgggttagccaccaagatccaactcacttaactttaatgtgtgtgcgtgcgcgtgtaaacaacgct |
10713826 |
T |
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| Q |
202 |
aaccaaacaattggactcaagtggtcaatgagtttcatcagaggacgaattgtttgaaagagtttggattcaaaatcctgattaccaggacctcattccc |
301 |
Q |
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| T |
10713827 |
aaccaaacaattggactcaaatggtcaatga-tttcatcagagaacgaattgtttgaaagaatttggattcaaaatcctgattaccaggacctcattccc |
10713925 |
T |
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| Q |
302 |
ctaagattcggagggttaatac |
323 |
Q |
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| T |
10713926 |
ctaagattcggagggttaatac |
10713947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 625 - 744
Target Start/End: Complemental strand, 14492413 - 14492295
Alignment:
| Q |
625 |
aagtaaattactaattttagtgtgtaccgataaaatttgac-aactatcttttggttggaaggcatgattaaacctatatacaccttgaatgataaactt |
723 |
Q |
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| T |
14492413 |
aagtaaattactgattatagtgtgtgccattaaaattctaccaactatcctttcgttggaaggcatgattaaacctaga--caccttgaaggataaactt |
14492316 |
T |
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| Q |
724 |
tgtgctttcaaaattgctcct |
744 |
Q |
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| T |
14492315 |
tgtgctttaaaaattgctcct |
14492295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Original strand, 10713966 - 10714007
Alignment:
| Q |
343 |
gttcatttacctaaattaccccttattttattatttaattgt |
384 |
Q |
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| T |
10713966 |
gttcatttacctaaattaccccttattttattatttaattgt |
10714007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 625 - 744
Target Start/End: Original strand, 49792673 - 49792791
Alignment:
| Q |
625 |
aagtaaattactaattttagtgtgtaccgataaaatttgac-aactatcttttggttggaaggcatgattaaacctatatacaccttgaatgataaactt |
723 |
Q |
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||||||||||| ||| |||||||| || |||||||| || ||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
49792673 |
aagtaaattacagattatagtgtgtgccattaaaattttaccaactatcttttcgttggaaggcatgattaaacctaaa--caccttgaaggataaactt |
49792770 |
T |
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| Q |
724 |
tgtgctttcaaaattgctcct |
744 |
Q |
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| T |
49792771 |
tgtgctttaaaaattgctcct |
49792791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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