View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16805_low_4 (Length: 465)
Name: NF16805_low_4
Description: NF16805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16805_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 801077 - 800629
Alignment:
| Q |
19 |
catttgttgtaggaggcatgatggttgagtcatatcagaatcatgatgaggatgaaagaggaagtgaagatgatgatttggttcttgttaatttggtttt |
118 |
Q |
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| T |
801077 |
catttgttgtaggaggcatgttgagtcatatatatcagaatcatgatgaggatgaaagaggaagtgaagatgatgatttggttcttgttaatttggtttt |
800978 |
T |
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| Q |
119 |
aaggtgcatggttactaggaaactggagatagtggtaagtcatgacttagaagtaataaatgatttcaagaggattgagcaaatggctttggttggatta |
218 |
Q |
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| T |
800977 |
aaggtgcatggttactaggaaactggagatagtggtaagtcatgacttagaagtactcaatgatttcaagaggtttgagcaaatggctttggttggatta |
800878 |
T |
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| Q |
219 |
tggtgtcttcatccaaacccaactcttagaccttcaatgaagaaagtgactcaaatgctagagggaacagtggaagttggggttccacctttgctttatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
800877 |
tggtgtcttcatccaaacccaactcttagaccttcaatgaagaaagtgactcaaatgctagagggaacagtggaagttggggttccacctttgctttatg |
800778 |
T |
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| Q |
319 |
atcagatgatggcaaatcagaactcttatagtttgtgaatgttattatat--tattgttccaccaaattttgtttccattttggatcaaatctttcttta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
800777 |
atcagatgatggcaaatcagaactcttatagtttgtgaatgttattatattatattgttccaccaaattttgtttccattttggatcaaatctttcttta |
800678 |
T |
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| Q |
417 |
agcttcaacttcaacatgtatgttaaatgacattgagaatgagtttttt |
465 |
Q |
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| T |
800677 |
agcttcaacttcaacatgtatgttaaatgacattgagaatgagtttttt |
800629 |
T |
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