View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16805_low_5 (Length: 462)
Name: NF16805_low_5
Description: NF16805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16805_low_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 462
Target Start/End: Complemental strand, 25332126 - 25331672
Alignment:
| Q |
15 |
atcaaagtaaagaaaagcaaccatcttaccaaataattacaacacaagtaataggtcagcttaaccaccattgaacctcacaaatgagcctctcaccata |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25332126 |
atcaaactaaagaaaagcaaccatcttaccaaataattacaacaaaagtaataggtcagcttaaccaccactgaacctcacaaatgagcctctcaccata |
25332027 |
T |
|
| Q |
115 |
tgggaaaaataatcacatggttaagcataagnnnnnnnnnn-gtgactaaggttaactattagttcaatcaaagaaaatcataagctaggcaaaaggtaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25332026 |
tgggaaaaataatcacatggttaagcataagtttttttttttgtgactaaggttaactattagttcaatcaaagaaaatcataagctaggcaaaaggtaa |
25331927 |
T |
|
| Q |
214 |
ccttaatcacacacaatcaagagattcacctaaaatacaaacactcaaactatacaatatgatgtgccaatctaatgcacaaaattttgtgcacataacc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25331926 |
ccttaatcacacacaatcaagagattcacctaaaacacaaacacacaaactatacaatatgatgtaccaatctaatgcacaaaattttgtgcacataacc |
25331827 |
T |
|
| Q |
314 |
aagacattcacctcaaacacaca------cacataaactataccacatgatgtgtcaatttaatacacaattttgtgtgcacaatgatccaataacatgg |
407 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25331826 |
aagatattcacctcaaacacacacacacacacataaactataccacatggtgtgtcaatttaatacacaattttgtgtgcacaatgatccaataacatgg |
25331727 |
T |
|
| Q |
408 |
attatgtcaaaaagggattccttaactacaaaatacttgactaaattaagattac |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25331726 |
attatgtcaaaaagggattccttaactacaaaatacttgactaaattaagattac |
25331672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University