View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16805_low_6 (Length: 439)
Name: NF16805_low_6
Description: NF16805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16805_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 21484628 - 21484193
Alignment:
| Q |
1 |
atcatcatcttcatcttcatcatcttcaacaccattgaaaaccattgcatgtacttcaactacaacaactactacctcttcttcttcctcagcttcttct |
100 |
Q |
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| T |
21484628 |
atcatcatcctcatcttcatcatcttcaacaccattgaaaaccattgcatgtacttcaactacaacaactactacctcttcttcttcctcagcttcttct |
21484529 |
T |
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| Q |
101 |
tcatctgcagcttcttgggctgttttgaaatcagatgttgaagtagatcatcaaggttatcatcaaaaacatggtcatccattagattatcatcatggtc |
200 |
Q |
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| T |
21484528 |
tcatctgcagcttcttgggctgttttgaaatcagatgttgaagtagatcatcaaggttatca---aaaacatggtcatccattagattatcatcatggtc |
21484432 |
T |
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| Q |
201 |
atcctccaacaactttgtcatcaactgcttctatggagatttctcagcaacagcaacaagatcttggtgtttctaacaatgatgttgttgttggtggtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21484431 |
atcctccaacaactttgtcatcaactgcttctatggagatttctcaacaacagcaacaagatcttggtgtttctaacaatgatgttgttgttggtggtgg |
21484332 |
T |
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| Q |
301 |
tgattgcatggatgatgttaacattatggatacttttggttacgtggagcttttagaagctaatgaattttttgaccctgcttcgatttttcaaaatgaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21484331 |
tgattgcatggatgatgttaacattatggatacttttggttacatggagcttttagaagctaatgaattttttgaccctgcttcgatttttcaaaatgaa |
21484232 |
T |
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| Q |
401 |
gatgaaaaccctttagtggatttcacacaagagcaacaa |
439 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
21484231 |
gatgaaaaccctttagtggatttcactcaagagcaacaa |
21484193 |
T |
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