View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16805_low_7 (Length: 335)

Name: NF16805_low_7
Description: NF16805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16805_low_7
NF16805_low_7
[»] chr1 (2 HSPs)
chr1 (1-317)||(37422820-37423138)
chr1 (232-277)||(30466932-30466977)
[»] chr8 (1 HSPs)
chr8 (1-304)||(6013395-6013692)
[»] chr6 (3 HSPs)
chr6 (145-229)||(28976154-28976239)
chr6 (225-305)||(28979679-28979759)
chr6 (232-279)||(21983282-21983329)
[»] chr7 (1 HSPs)
chr7 (232-298)||(47799258-47799324)
[»] chr3 (2 HSPs)
chr3 (159-251)||(49086087-49086179)
chr3 (232-302)||(20313408-20313478)
[»] chr4 (1 HSPs)
chr4 (160-276)||(19130306-19130423)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 37422820 - 37423138
Alignment:
Q  1 atgttaaagctacaagcataaggaatttttgatagccatatgatatgaatagaacctcataggattcaagacccattgcaatttgaagccacttaaaagt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37422820 atgttaaagctacaagcataaggaatttttgatacccatatgatatgaatagaacctcataggattcaaaacccattgcaatttgaagccacttaaaagt 37422919  T
Q  101 gtagtgttactgaagcaaacataaacagtggatttggcttcctttggtgggtgaga--gatgagagagaatggttagggaagataggataaaaaattcag 198  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  37422920 gtagtgttaccgaaacaaacataaacagtggatttggcttcctttggtgggtgagagagatgagagagaatggttagggaagataggataaaaaattcag 37423019  T
Q  199 tgtagagagtgcatgataagaacatgttcttcttttaatctagtggtagaaattcaacttccccatgatgggaaaaaactttgcttacccatgctaaatg 298  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  37423020 tgtagagagtgcatgataagaacatgttcttcgtttaatctagtggtagaaattcaactttcccatggtgggaaaaaactttgcttacccatgctaaatg 37423119  T
Q  299 tcacccaacttcatactta 317  Q
     ||||||||||||||||||    
T  37423120 ccacccaacttcatactta 37423138  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 30466932 - 30466977
Alignment:
Q  232 tttaatctagtggtagaaattcaacttccccatgatgggaaaaaac 277  Q
    ||||||||| ||||| ||||||||||| |||||||||||| |||||    
T  30466932 tttaatctaatggtaaaaattcaactttcccatgatgggagaaaac 30466977  T

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Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 6013395 - 6013692
Alignment:
Q  1 atgttaaagctacaagcataaggaatttttgatagccatatgatatgaatagaacctcataggattcaagacccattgcaatttgaagccacttaaaagt 100  Q
    |||||||||||||||| ||||||||||||| ||| ||     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  6013395 atgttaaagctacaagtataaggaattttttataccc-----atatgaatagaacctcataggatttaagacccattgcaatttgaagccacttaaaact 6013489  T
Q  101 gtagtgttactgaagcaaacataaacagtggatttggcttcctttggtgggtgagagatgagagagaatggttagggaagataggataaaaaattcagtg 200  Q
    |||||||||  ||| |||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6013490 gtagtgttatcgaaacaaaaataaacattgaatttgtcttcctttggtgggtgagagatgagagagaatggttagggaagataggataaaaaattcagtg 6013589  T
Q  201 tagagagtgcatgataagaacatgttcttcttttaatctagtggtagaaattcaacttccccatgatgggaaaaaactttgcttacccatgctaaatgtc 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||  | |||||||| |    
T  6013590 tagagagtgcatgataagaatatgttcttcttttaatctagtggtagaaattcaactt-tccatggtgggaaaaaactttgcttacataggctaaatgac 6013688  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 28976154 - 28976239
Alignment:
Q  145 tggtgggtgagagatgagagagaatggttagggaagatagga-taaaaaattcagtgtagagagtgcatgataagaacatgttctt 229  Q
    |||| |||||||||||||||||||| |||||||||||||| |  ||||||||||| ||||||| |||||||||||| |||||||||    
T  28976154 tggtaggtgagagatgagagagaatagttagggaagatagtacaaaaaaattcagcgtagagaatgcatgataagagcatgttctt 28976239  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 28979679 - 28979759
Alignment:
Q  225 ttcttcttttaatctagtggtagaaattcaacttccccatgatgggaaaaaactttgcttacccatgctaaatgtcaccca 305  Q
    ||||||||||||||||||| || |||||||||||  | ||| ||| ||||||||||||||||||| |||||||| ||||||    
T  28979679 ttcttcttttaatctagtgataaaaattcaacttttcaatggtggaaaaaaactttgcttacccaggctaaatgccaccca 28979759  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 21983282 - 21983329
Alignment:
Q  232 tttaatctagtggtagaaattcaacttccccatgatgggaaaaaactt 279  Q
    ||||||||| |||||||||||||| || ||||||||||||||||||||    
T  21983282 tttaatctaatggtagaaattcaaatttcccatgatgggaaaaaactt 21983329  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 47799324 - 47799258
Alignment:
Q  232 tttaatctagtggtagaaattcaacttccccatgatgggaaaaaactttgcttacccatgctaaatg 298  Q
    ||||||||| ||||| ||||  ||||| ||||||||||||||||||||  |||||||| ||||||||    
T  47799324 tttaatctaatggtaaaaatcaaactttcccatgatgggaaaaaacttcacttacccaggctaaatg 47799258  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 49086087 - 49086179
Alignment:
Q  159 tgagagagaatggttagggaagataggataaaaaattcagtgtagagagtgcatgataagaacatgttcttcttttaatctagtggtagaaat 251  Q
    ||||||||||||||| ||||||||||  ||||||||  ||||  || |||||||||||| |   |||| ||||||||||| | ||||||||||    
T  49086087 tgagagagaatggttggggaagatagtgtaaaaaatatagtggtgaaagtgcatgataatagtgtgtttttcttttaatccaatggtagaaat 49086179  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 20313408 - 20313478
Alignment:
Q  232 tttaatctagtggtagaaattcaacttccccatgatgggaaaaaactttgcttacccatgctaaatgtcac 302  Q
    ||||||||| ||||| |||| ||| || ||||||||||||||| ||||  ||| ||||| |||||||||||    
T  20313408 tttaatctaatggtaaaaatccaattttcccatgatgggaaaatacttccctttcccatactaaatgtcac 20313478  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 19130306 - 19130423
Alignment:
Q  160 gagagagaatggttagggaagatag-gataaaaaattcagtgt-agagagtgcatgataagaacatgttcttcttttaatctagtggtagaaattcaact 257  Q
    |||||||||||||| ||||||| || || |||||||||||||| |||| | |||||||||||   |||||||| ||||||| | ||||  |||  ||| |    
T  19130306 gagagagaatggttggggaagaaagtgagaaaaaattcagtgttagag-gagcatgataagattgtgttcttcatttaatcaaatggtccaaaaacaatt 19130404  T
Q  258 tccccatgatgggaaaaaa 276  Q
    | |||||||||||||||||    
T  19130405 ttcccatgatgggaaaaaa 19130423  T

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