View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16806_low_10 (Length: 257)
Name: NF16806_low_10
Description: NF16806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16806_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 31384733 - 31384489
Alignment:
| Q |
13 |
aaaataacattaaacagtacaagattacagaggtttgcaaaaccagggaagggaagagaaaatccacaatacacatttctaagcttccaagttagcttac |
112 |
Q |
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| T |
31384733 |
aaaataacattaaacagtacaagattacagaggtttgcaaaaccagggaagggaagagaaaatccacaatacacatttctaagcttccaagttagcttac |
31384634 |
T |
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| Q |
113 |
cacaatatcatcatcatgcaaggaacagaccaataactgaacacttaatgcaaggaacagaccaataactaatcacttaatatatgcagaactagaaagt |
212 |
Q |
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| T |
31384633 |
cacaatatcatcatcatgcaaggaacagaccaataactgaacacttaatgcaaggaacagaccaataactaatcacttaatatatgcagaactagaaagt |
31384534 |
T |
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| Q |
213 |
ataattattaaataaaaacaacatgatggtggtggtgatggtggt |
257 |
Q |
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| T |
31384533 |
ataattattaaataaaaacaacatgatggtggtagtggtggtggt |
31384489 |
T |
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