View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16806_low_11 (Length: 250)
Name: NF16806_low_11
Description: NF16806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16806_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 33858640 - 33858876
Alignment:
| Q |
1 |
ttatttcttcttttcactcgacttggctttaatatttaattttatgctaataagcattcatatgattgagtattgcagcctagacttgtgtcaatttcga |
100 |
Q |
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| T |
33858640 |
ttatttcttctttgctttagacttggctttaatatttaattttatgctaataagcattcatatgattgagtattgcagcctagacttgtgtcaatttcga |
33858739 |
T |
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| Q |
101 |
acttcatcgcatttgcaaatcctaaagcacctgtgtatccgcgtcttgctcatggaaaatcttggaatgaagtaagtttatctagtccatttcattacac |
200 |
Q |
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| T |
33858740 |
acttcatcgcatttgcaaatcctaaagcacctgtgtatccgcgtcttgcgcatggaaaatcttggaatgaagtaagtttatctagtccatttcattacac |
33858839 |
T |
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| Q |
201 |
accactagcctaacatttcctaatcatacattggttc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
33858840 |
accactagcctaacatttcctaatcatacattggttc |
33858876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 33873556 - 33873736
Alignment:
| Q |
57 |
ttcatatgattgagtattgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgtatccgcgtcttgctcatgga |
156 |
Q |
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| T |
33873556 |
ttcatttgattgagcattgcagcctaagcttgttgcagtttcaaacttcatcgcatttgcaaatcctaaagcacctgtatatccacgccttgctcatgga |
33873655 |
T |
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| Q |
157 |
aaatcttggaatgaagtaagtttatctagtccatttcattacacaccactagcctaacatttcctaatcatacattggttc |
237 |
Q |
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| T |
33873656 |
aagtcttggaatgaagtaagtttatctagtctatttaattacacaatactaacctaacatttcctaattatacattggttc |
33873736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 33868987 - 33869129
Alignment:
| Q |
38 |
aattttatgctaataagcattcatatgattgagtattgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgta |
137 |
Q |
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||||||||||||| ||| ||||| |||||||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33868987 |
aattttatgctaacaagtgttcatttgattgagcattgcagcctaagcttgtggcagtttcgaacttcatcgcatttgcaaatcctaaagcacctgtgta |
33869086 |
T |
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| Q |
138 |
tccgcgtcttgctcatggaaaatcttggaatgaagtaagttta |
180 |
Q |
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||| || |||||| ||||||| ||||||||||||||| ||||| |
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| T |
33869087 |
tccacgccttgctaatggaaagtcttggaatgaagtatgttta |
33869129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 42781784 - 42781889
Alignment:
| Q |
74 |
tgcagcctagacttgtgtcaatttcgaacttcatcgcatttgcaaatcctaaagcacctgtgtatccgcgtcttgctcatggaaaatcttggaatgaagt |
173 |
Q |
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||||||||| ||||||| | |||| || ||||| ||||||| ||||||||||| ||| | ||||| || |||||||| || ||||||||| ||||||| |
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| T |
42781784 |
tgcagcctaaacttgtggcggtttccaatttcatatcatttgccaatcctaaagcgcctttatatcctcgccttgctcaagggaaatcttgggatgaagt |
42781883 |
T |
|
| Q |
174 |
aagttt |
179 |
Q |
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|||||| |
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| T |
42781884 |
aagttt |
42781889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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