View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16806_low_5 (Length: 347)
Name: NF16806_low_5
Description: NF16806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16806_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 48 - 304
Target Start/End: Complemental strand, 31644219 - 31643964
Alignment:
| Q |
48 |
aggttgtaggaccatcgttgacgggtttaggttagaactttccacgtaaatcattggaaaaatcgttagacctttgtgcgagatagtaacagtagcatct |
147 |
Q |
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| T |
31644219 |
aggttgtaggaccatcgttgacgggtttaggttagaactttccacgtaactcattggaaaa-tcgttagacctttgtgcgagatagtaacagtagcatct |
31644121 |
T |
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| Q |
148 |
cacactccaattataaaaggttgctctcattctcacccaatattggtgaaatcaatttttacaaacttgagataaaatgacgtccattgttgttcaaatt |
247 |
Q |
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| T |
31644120 |
cacactccaattataaaaggttgctctcattctcacccaatattggtgaaatcaatttttacaaacttgaaacaaaatgacgtccattgttgttcaaatt |
31644021 |
T |
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| Q |
248 |
tggagatggttcttgcagccaaaggtatggagatttgtggggtttgcttcatatatt |
304 |
Q |
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| T |
31644020 |
tggagatggttcttgcagccaaaggtatggagatttgtgggctttgcttcatctatt |
31643964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 40843451 - 40843413
Alignment:
| Q |
260 |
ttgcagccaaaggtatggagatttgtggggtttgcttca |
298 |
Q |
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| T |
40843451 |
ttgcagacaaaggtatggagatttgtgggatttgcttca |
40843413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 31362944 - 31362997
Alignment:
| Q |
242 |
caaatttggagatggttcttgcagccaaaggtatggagatttgtggggtttgct |
295 |
Q |
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| T |
31362944 |
caaatttggagatgtatgatgcagccaaaggtgtggagatttgtgggatttgct |
31362997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 31378651 - 31378704
Alignment:
| Q |
242 |
caaatttggagatggttcttgcagccaaaggtatggagatttgtggggtttgct |
295 |
Q |
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| T |
31378651 |
caaatttggagatggatgatgcagccaaaggtgtggagatttctgggatttgct |
31378704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 31476068 - 31476031
Alignment:
| Q |
261 |
tgcagccaaaggtatggagatttgtggggtttgcttca |
298 |
Q |
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| T |
31476068 |
tgcagacaaaggtatggagatttgtgggctttgcttca |
31476031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 31279631 - 31279575
Alignment:
| Q |
242 |
caaatttggagatggttcttgcagccaaaggtatggagatttgtggggtttgcttca |
298 |
Q |
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| T |
31279631 |
caaatatggagatggttgatgcagccaaaagtgtggagatttgtaggctttgcttca |
31279575 |
T |
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