View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16806_low_6 (Length: 338)

Name: NF16806_low_6
Description: NF16806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16806_low_6
NF16806_low_6
[»] chr5 (5 HSPs)
chr5 (10-235)||(5804931-5805156)
chr5 (198-232)||(33122639-33122673)
chr5 (197-232)||(16870240-16870275)
chr5 (103-150)||(35576057-35576104)
chr5 (200-228)||(31738343-31738371)
[»] chr3 (1 HSPs)
chr3 (180-232)||(39022659-39022711)
[»] chr1 (2 HSPs)
chr1 (180-228)||(50597466-50597514)
chr1 (203-231)||(18376444-18376472)
[»] chr2 (3 HSPs)
chr2 (197-231)||(9557297-9557331)
chr2 (193-230)||(21372057-21372094)
chr2 (180-228)||(18953375-18953423)
[»] chr7 (1 HSPs)
chr7 (191-231)||(43881112-43881152)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 5804931 - 5805156
Alignment:
Q  10 aagaaaatccaattccaaaacaataataagataatttatctctattttaaaccttaatcaaagaagatacttcaaaataatgtcataagtggcccaataa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5804931 aagaaaatccaattccaaaacaataataagataatttatctctattttaaaccttaatcaaagaagatacttcaaaataatgtcataagtggcccaataa 5805030  T
Q  110 gctgacatcaaagactaaaaataacggtttttaagtttgcagggtcatgatccaaacnnnnnnngaaactactaaaaccagataatgctataattgcaga 209  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  5805031 gctgacatcaaagactaaaaataaaggtttttaagtttgcagggtcatgatccaaacaaaaaaagaaactactaaaaccagataatgctataattgcaga 5805130  T
Q  210 gactaaaatcatatttaaacctactt 235  Q
    ||||||||||||||||||||||||||    
T  5805131 gactaaaatcatatttaaacctactt 5805156  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 33122639 - 33122673
Alignment:
Q  198 tataattgcagagactaaaatcatatttaaaccta 232  Q
    |||||||||||||||||||||||||||||||||||    
T  33122639 tataattgcagagactaaaatcatatttaaaccta 33122673  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 16870240 - 16870275
Alignment:
Q  197 ctataattgcagagactaaaatcatatttaaaccta 232  Q
    |||||||||||| |||||||||||||||||||||||    
T  16870240 ctataattgcagggactaaaatcatatttaaaccta 16870275  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 35576057 - 35576104
Alignment:
Q  103 ccaataagctgacatcaaagactaaaaataacggtttttaagtttgca 150  Q
    ||||||||||||||||| | |||||||| |||||||||||| ||||||    
T  35576057 ccaataagctgacatcagaaactaaaaacaacggtttttaaatttgca 35576104  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 31738371 - 31738343
Alignment:
Q  200 taattgcagagactaaaatcatatttaaa 228  Q
    |||||||||||||||||||||||||||||    
T  31738371 taattgcagagactaaaatcatatttaaa 31738343  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 39022711 - 39022659
Alignment:
Q  180 actaaaaccagataatgctataattgcagagactaaaatcatatttaaaccta 232  Q
    |||||||||| | || || ||||||||||||||||||||||||| ||||||||    
T  39022711 actaaaaccaaaaaaagcgataattgcagagactaaaatcatatctaaaccta 39022659  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 50597466 - 50597514
Alignment:
Q  180 actaaaaccagataatgctataattgcagagactaaaatcatatttaaa 228  Q
    |||||||||| | |||| |||||||| ||||||||||||||||||||||    
T  50597466 actaaaaccaaaaaatgttataattgtagagactaaaatcatatttaaa 50597514  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 18376472 - 18376444
Alignment:
Q  203 ttgcagagactaaaatcatatttaaacct 231  Q
    |||||||||||||||||||||||||||||    
T  18376472 ttgcagagactaaaatcatatttaaacct 18376444  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 9557331 - 9557297
Alignment:
Q  197 ctataattgcagagactaaaatcatatttaaacct 231  Q
    |||||||||||||||||| ||||||||||||||||    
T  9557331 ctataattgcagagactacaatcatatttaaacct 9557297  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 21372094 - 21372057
Alignment:
Q  193 aatgctataattgcagagactaaaatcatatttaaacc 230  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  21372094 aatgctataattgcagtgactaagatcatatttaaacc 21372057  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 18953423 - 18953375
Alignment:
Q  180 actaaaaccagataatgctataattgcagagactaaaatcatatttaaa 228  Q
    |||||||||| |||| |||||| ||| | ||||||||||||||||||||    
T  18953423 actaaaaccaaataacgctatagttggatagactaaaatcatatttaaa 18953375  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 43881152 - 43881112
Alignment:
Q  191 ataatgctataattgcagagactaaaatcatatttaaacct 231  Q
    |||||||||||||||||   |||||||||||||||||||||    
T  43881152 ataatgctataattgcaagaactaaaatcatatttaaacct 43881112  T

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