View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16806_low_9 (Length: 277)
Name: NF16806_low_9
Description: NF16806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16806_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 11119442 - 11119693
Alignment:
| Q |
15 |
catcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctcc |
114 |
Q |
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| T |
11119442 |
catcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctcc |
11119541 |
T |
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| Q |
115 |
atcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcattt |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
11119542 |
atcatcgttgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccattt |
11119641 |
T |
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| Q |
215 |
cctaaattcaccttaggttcaacatacaattcaacatcacacttcttctcac |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11119642 |
cctaaattcaccttaggttcaacatacaattcaacatcacacttcttatcac |
11119693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 12205970 - 12206175
Alignment:
| Q |
34 |
aaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttca |
133 |
Q |
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| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
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| Q |
134 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggtt |
233 |
Q |
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| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttaggtt |
12206169 |
T |
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| Q |
234 |
caacat |
239 |
Q |
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|||||| |
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| T |
12206170 |
caacat |
12206175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 32741144 - 32741389
Alignment:
| Q |
13 |
gacatcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatct |
112 |
Q |
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||||| |||||||| |||||||||| |||||||| ||||||||||||| |||| |||| |||||||||| ||| |||||||||||||||||||||||||| |
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| T |
32741144 |
gacattatcaaacccatcatcaaccgcagccatcttctcttcttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatct |
32741243 |
T |
|
| Q |
113 |
ccatcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcat |
212 |
Q |
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||| |||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||| |
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| T |
32741244 |
ccaccatcgatgtctacttcaccaacatcgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcat |
32741343 |
T |
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| Q |
213 |
ttcctaaattcaccttaggttcaacatacaattcaacatcacactt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32741344 |
ttcctaaattcaccttaggttcaacatacaattcaacatcgcactt |
32741389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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