View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16807_high_13 (Length: 253)

Name: NF16807_high_13
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16807_high_13
NF16807_high_13
[»] chr5 (12 HSPs)
chr5 (13-238)||(13418673-13418898)
chr5 (20-238)||(13425554-13425772)
chr5 (23-232)||(13446263-13446472)
chr5 (61-235)||(13453118-13453292)
chr5 (26-217)||(13412308-13412499)
chr5 (38-215)||(13411596-13411773)
chr5 (46-233)||(13386067-13386254)
chr5 (131-203)||(13448892-13448964)
chr5 (45-220)||(13372495-13372670)
chr5 (46-218)||(13389870-13390042)
chr5 (61-220)||(13378249-13378408)
chr5 (61-134)||(13394414-13394487)
[»] chr4 (1 HSPs)
chr4 (38-235)||(47600457-47600654)
[»] chr8 (1 HSPs)
chr8 (58-135)||(28431615-28431692)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 13418673 - 13418898
Alignment:
Q  13 attctcagagatatatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13418673 attctcagagatatatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttatcgagacgct 13418772  T
Q  113 ccattgctgtgttgacataatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccc 212  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13418773 ccattgctgtgttgacataatcaataggaacaacctcaatatcaggcgttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccc 13418872  T
Q  213 tccaatcaaacttccagctactaact 238  Q
    ||||||||||||||||||||||||||    
T  13418873 tccaatcaaacttccagctactaact 13418898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 13425554 - 13425772
Alignment:
Q  20 gagatatatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgc 119  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  13425554 gagatatatcctgcaatgtttaagggcttggttttagtgtatttccaatatcaataacgaatcgatatttcacatctgctttctcgagacgctccattgc 13425653  T
Q  120 tgtgttgacataatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatc 219  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||||||||| || |||||||||| |||||||||| ||||||||||||||||||||    
T  13425654 tgtgttgacataatcaataggaacaacctcaatatcaggtgttacattgtgttcggccgcaaaatcaatcatttcttgagtctcctttatccctccaatc 13425753  T
Q  220 aaacttccagctactaact 238  Q
    |||||||||||||||||||    
T  13425754 aaacttccagctactaact 13425772  T

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Target: chr5; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 13446263 - 13446472
Alignment:
Q  23 atatatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgt 122  Q
    ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| |||||| ||||  | |||||||||||||| ||    
T  13446263 atatatcctgcaatgtttaagggcttggttttagtgaatttccaatatcaatcacgaatcgatatttgacatctcctttaacaagacgctccattgcggt 13446362  T
Q  123 gttgacataatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatcaaa 222  Q
    |||||||||||||||||| ||||||||||| |||||| ||||||||||||  || |||||||||| |||||||||| |||| |||||||||||||| |||    
T  13446363 gttgacataatcaataggaacaacctcaatctcaggcgttacattgtgtttagcagcaaaatcaatcatttcttgagtctcttttatccctccaattaaa 13446462  T
Q  223 cttccagcta 232  Q
    ||||||||||    
T  13446463 cttccagcta 13446472  T

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Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 61 - 235
Target Start/End: Original strand, 13453118 - 13453292
Alignment:
Q  61 tttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaacctcaatatcaggct 160  Q
    ||||||||||||||||| ||||||||||| |||||||||||    || |||||||| ||||||||||||||||||||||| |  | ||||||||||||||    
T  13453118 tttccaatatcaatcacaaatcgatatttcacatctgctttaagaaggcgctccatcgctgtgttgacataatcaataggaatgatctcaatatcaggct 13453217  T
Q  161 ttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatcaaacttccagctacta 235  Q
    ||||||||||||| || |||||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||    
T  13453218 ttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaatcaaacttcctgctacta 13453292  T

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Target: chr5; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 13412308 - 13412499
Alignment:
Q  26 tatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgtt 125  Q
    |||||||||| ||| ||| |||||||||||| || ||||||||||||||||| ||||||||||| || ||| | ||  | ||||||| ||||||||||||    
T  13412308 tatcctgcaaagttcaagagcttggtttcagtgtgtttccaatatcaatcacaaatcgatatttcacgtctcccttagcaagacgctgcattgctgtgtt 13412407  T
Q  126 gacataatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaa 217  Q
    |||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||||| || |||||||||| ||||||||| ||||||||    
T  13412408 gacataatcaatcggaacaacctcgatatccggctttacattgtgttctgccgcaaaattaatcatttcttgagtctcctttaaccctccaa 13412499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 13411773 - 13411596
Alignment:
Q  38 tttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaat 137  Q
    |||||||||||| ||| || || |||| ||| |||||||| ||||||||||||||||||| ||| | || ||||||||||||||||||||||||||| ||    
T  13411773 tttaagggcttgttttaagagtgtttctaatgtcaatcacaaatcgatatttaacatctgatttgtggacacgctccattgctgtgttgacataatccat 13411674  T
Q  138 agggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctcc 215  Q
    ||| |  || ||||||||||| | |||||||||||  || |||||||||| ||| |||||| | ||||| || |||||    
T  13411673 aggtatgacttcaatatcaggttgtacattgtgtttagcagcaaaatcaatcatctcttgagtttccttcattcctcc 13411596  T

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Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 233
Target Start/End: Complemental strand, 13386254 - 13386067
Alignment:
Q  46 cttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaa 145  Q
    ||||||||||| || |||||||| || | ||| ||||||||||| |||||||||||   ||| ||||| ||||||||||| |||||||| | ||| ||||    
T  13386254 cttggtttcagagtgtttccaatgtcgagcacaaatcgatatttgacatctgctttgaggagtcgctcaattgctgtgttaacataatccacaggaacaa 13386155  T
Q  146 cctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatcaaacttccagctac 233  Q
    | ||||| ||||| |||||||||||||  || ||||| |||| ||| |||||| ||||||| || | ||||||   ||||||||||||    
T  13386154 cttcaatgtcaggttttacattgtgtttagcagcaaattcaagcatctcttgagtctccttaatgcttccaattccacttccagctac 13386067  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 13448892 - 13448964
Alignment:
Q  131 aatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctc 203  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  13448892 aatcgataggaacaacctcagtatcaggctttacattgtgttctgctgcaaaatcaatcatttcttgagtctc 13448964  T

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Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 220
Target Start/End: Original strand, 13372495 - 13372670
Alignment:
Q  45 gcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggaca 144  Q
    ||||| ||||| ||| |||||||| ||||| || || |||||||| ||||| |||||    ||||| ||||||||  | || |||||||| || || | |    
T  13372495 gcttgctttcaacgtgtttccaatgtcaataacaaagcgatatttcacatcagctttgagtagacgatccattgcactattcacataatctattggaata 13372594  T
Q  145 acctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatca 220  Q
    |||||||||||||| || ||||  ||||  ||||||||||||| |||||||||  |||||||||||||||||||||    
T  13372595 acctcaatatcaggtttcacatcatgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaatca 13372670  T

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Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 13390042 - 13389870
Alignment:
Q  46 cttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaa 145  Q
    ||||||||||  || ||||| ||||| | ||| ||||||||||| |||||||||||   ||| ||||| ||||||||||| |||||||| | ||| || |    
T  13390042 cttggtttcaaagtgtttccgatatcgagcacaaatcgatatttgacatctgctttgaggagtcgctcaattgctgtgttaacataatccacaggaacga 13389943  T
Q  146 cctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaat 218  Q
    | ||||| ||||| |||||  ||||||  || ||||| |||| ||| |||||| ||||||| || ||||||||    
T  13389942 cttcaatgtcaggttttacgctgtgtttagcagcaaagtcaagcatctcttgagtctccttgatgcctccaat 13389870  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 220
Target Start/End: Original strand, 13378249 - 13378408
Alignment:
Q  61 tttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaacctcaatatcaggct 160  Q
    |||||||| ||||| || ||||||||||| ||||| |||||  | |  || |||||||| || || |||||||| |  || ||||||||||||||||| |    
T  13378249 tttccaatgtcaataacaaatcgatatttcacatcagctttgactaagcgttccattgcagtatttacataatccactggaacaacctcaatatcaggtt 13378348  T
Q  161 ttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatca 220  Q
    ||||    ||||  ||||||||||||| |||||||||  | ||||| |||||||||||||    
T  13378349 ttacgccatgtttggctgcaaaatcaatcatttcttgtgtttccttcatccctccaatca 13378408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 13394487 - 13394414
Alignment:
Q  61 tttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatc 134  Q
    ||||| ||||| | ||| ||||||||||| |||||||||||   ||| |||| |||||||||||| ||||||||    
T  13394487 tttccgatatcgagcacaaatcgatatttgacatctgctttgaggagtcgcttcattgctgtgttaacataatc 13394414  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 47600457 - 47600654
Alignment:
Q  38 tttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaat 137  Q
    |||||| ||||||||| || || |||||||| |||||||| ||||||||||| |||||||||||   ||| ||||||||||| ||||| |||||||| ||    
T  47600457 tttaagagcttggtttgagagtgtttccaatgtcaatcacaaatcgatatttgacatctgctttgaggagtcgctccattgcagtgttaacataatccat 47600556  T
Q  138 agggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatcaaacttccagctacta 235  Q
    |||||  || |||||   ||| |||||||||||||  || |||||||||| ||| |||||| ||||||| |||||||||||   ||||||||||||||    
T  47600557 agggatgacttcaatggtaggttttacattgtgtttagcagcaaaatcaagcatatcttgagtctccttcatccctccaatattacttccagctacta 47600654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 28431692 - 28431615
Alignment:
Q  58 gtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatca 135  Q
    ||||| ||||||||||| || ||||||||||| |||||||||||    |||||||||| ||| ||||| |||||||||    
T  28431692 gtattcccaatatcaataacaaatcgatatttgacatctgctttaagcagacgctccaatgcagtgttcacataatca 28431615  T

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