View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16807_high_15 (Length: 249)
Name: NF16807_high_15
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16807_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 41022484 - 41022736
Alignment:
| Q |
1 |
gcttagtgtatttaagattgtgagaagagggtcttataagtggccctttgaaaaattcagcaactattgctcccattaatgatatcatcattccaattat |
100 |
Q |
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| T |
41022484 |
gcttagtgtatttaagattgtgagaagagggtcttataagtggccctttgaaaaattcagcaactattgctcccattaatgataccatcattccaattat |
41022583 |
T |
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| Q |
101 |
ttggacttggataccagagtttcttaaattcaactctaccttcctgnnnnnnnnnnntcaattaagttgatccatcaaatttatgt----attaatgtaa |
196 |
Q |
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| T |
41022584 |
ttggacttggataccagagtttcttaaattcaactctaccttcctgaaaaaaaataatcaattaagttgatccatcaaatttatgtattaattaatgtaa |
41022683 |
T |
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| Q |
197 |
caaaatgaagaatatataaaatagatgacataattttatttatttttacataa |
249 |
Q |
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| T |
41022684 |
caaaatgaagaatatataaaatagatgacataattttatttatttttacataa |
41022736 |
T |
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