View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16807_high_16 (Length: 249)
Name: NF16807_high_16
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16807_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 17609679 - 17609439
Alignment:
| Q |
1 |
actgccgcaaaataaagattttagaggtctttgcagtggcatcaatattgcaaccgcagctgaatcagctgcattttccgctatatcaaggtttgcagac |
100 |
Q |
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| T |
17609679 |
actgcctcagaataaagattttagaggtctttgcagtggcatcaatattgcaaccgcagctgaatcagctgcattttccgcgatatcaaggtttgcagac |
17609580 |
T |
|
| Q |
101 |
cgttaccgcaatatagaaccacgagggaaagaacaaacattcatgttgttaatgaaaatatgaaaaactcacctgtcccctgctgagcatttcagacttt |
200 |
Q |
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| T |
17609579 |
cgtgaccgcaatatagaaccacgagggaaagaacaaacattcatgttgttaatgaaaatatgaaaaactcacctgtcccctgctgagcatttcagacttt |
17609480 |
T |
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| Q |
201 |
ttcaactttttcatggcatatatattaccggatttcatctc |
241 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||| |
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| T |
17609479 |
ttcaactttttcatggcatatatattgccggatttcttctc |
17609439 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 48258400 - 48258332
Alignment:
| Q |
168 |
ctcacctgtcccctgctgagcatttcagactttttcaactttttcatggcatatatattaccggatttc |
236 |
Q |
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|||||||| || || |||||||||||||| || |||| ||||||||||||||| ||||| || |||||| |
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| T |
48258400 |
ctcacctggcctctcctgagcatttcagatttcttcagctttttcatggcatagatatttccagatttc |
48258332 |
T |
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