View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16807_high_17 (Length: 245)
Name: NF16807_high_17
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16807_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 21443764 - 21443897
Alignment:
| Q |
103 |
acagtgctgcaaatcttcatttcctatgagatttcaaccatggtcggagaaaattcataaaaacagcttcatttcaagttccaacaactcggtttccttt |
202 |
Q |
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| T |
21443764 |
acagtgctgcaaatcttcatttcctatgagatttcaaccatggtcggagaaaattcataaaaacagcttcatttcaagttccaacaactcggtttccctt |
21443863 |
T |
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| Q |
203 |
caattcaattgatcactggttttctaaaatccca |
236 |
Q |
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| T |
21443864 |
caattcaattgatcactggttttctaaaatccca |
21443897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 50012694 - 50012561
Alignment:
| Q |
103 |
acagtgctgcaaatcttcatttcctatgagatttcaaccatggtcggagaaaattcataaaaacagcttcatttcaagttccaacaactcggtttccttt |
202 |
Q |
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| T |
50012694 |
acagtgctgcaaatcttcatttcctatgagatttcaaccatggtcggagaaaattcataaaaacagcttcatttcaagttccaacaactcggtttccctt |
50012595 |
T |
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| Q |
203 |
caattcaattgatcactggttttctaaaatccca |
236 |
Q |
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| T |
50012594 |
caattcaattgatcactgattttctaaaatccca |
50012561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 42066872 - 42066742
Alignment:
| Q |
104 |
cagtgctgcaaatcttcatttcctatgagatttcaaccatggtcggagaaaattcataaaaacagcttcatttcaagttccaacaactcggtttcctttc |
203 |
Q |
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| T |
42066872 |
cagtgctgcaaatcttcatttcctatgagatttcaaccatggttggagaaaattcataaaaacagcttcatttcaagtttcaacaactcggtttcccttc |
42066773 |
T |
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| Q |
204 |
aattcaattgatcactggttttctaaaatcc |
234 |
Q |
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| T |
42066772 |
aattcaattgatcactgattttctaaaatcc |
42066742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 21443678 - 21443712
Alignment:
| Q |
17 |
agaatgaaggttgtatcaaatcagcatcacacata |
51 |
Q |
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| T |
21443678 |
agaatgaaggttgtatcaaatcagcatcacacata |
21443712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 42066959 - 42066925
Alignment:
| Q |
17 |
agaatgaaggttgtatcaaatcagcatcacacata |
51 |
Q |
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| T |
42066959 |
agaatgaaggttgtatcaaatcagcatcacacata |
42066925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 50012780 - 50012746
Alignment:
| Q |
17 |
agaatgaaggttgtatcaaatcagcatcacacata |
51 |
Q |
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| T |
50012780 |
agaatgaaggttgtatcaaatcagcatcacacata |
50012746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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