View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16807_high_2 (Length: 564)
Name: NF16807_high_2
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16807_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 196 - 495
Target Start/End: Original strand, 28629045 - 28629356
Alignment:
| Q |
196 |
actgcagctacatgatccttattaatagtgacatgttgggaaatttggaggaataggaatgaggagatatttcaaaataaataaactcaagtaggcgg-- |
293 |
Q |
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| T |
28629045 |
actgcagctacatgatccttattaatagtgacatgttgggaaatttggaggaataggaatgaggagatatttcaaaataaataaactcacgtaggcgggg |
28629144 |
T |
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| Q |
294 |
atgctaatgacattttcttcatttcactcaaacatggtgcagactcttggtcacacaatatttctctctattatgtggcatgttagaattccacaaatgg |
393 |
Q |
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| T |
28629145 |
atgctaatgacattttcttcatttcactcaaacatggtgcagactcttggtaacacaatacttctctctattatgtggcatgttagaattccaccaatgg |
28629244 |
T |
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| Q |
394 |
gaggat----------gatgcttacttatttcaaaagcctctgttgggtgacgcatatatgaaacaacctccaaaccaatagagattgttgttggacacg |
483 |
Q |
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| T |
28629245 |
gaggatgtacttcaaagatgcttacttatttcaaaagcctctgttgggtcacgcatatatgaaacaacctccaaaccaatagagattgttgttggacacg |
28629344 |
T |
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| Q |
484 |
ataacctgcata |
495 |
Q |
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| T |
28629345 |
ataacctgcata |
28629356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 28628804 - 28628961
Alignment:
| Q |
13 |
acaaactagtctactaacaaaagagaatcgaacataagactttgaaagtagcacacttcaaggtcaaaagtcaacccaaaagaaacattg-ttattggct |
111 |
Q |
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| T |
28628804 |
acaaactagtctactaactaaagagaatcgaacataagactttaaaagtagtacacttcaaggtcacaagtcaactcaaatgaaacattgtttattggc- |
28628902 |
T |
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| Q |
112 |
ttgttatacatgatttccttccaactaatgaatcacttcagaaacttccgtcatcttac |
170 |
Q |
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| T |
28628903 |
ttgttatacatgatttccttccaactgatgaatcacttcagaaacttccgtcatcttac |
28628961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 28629507 - 28629565
Alignment:
| Q |
493 |
atagtccttgtatcaacccccaatccttaactgtgtcaagtgtaatatttatggttttg |
551 |
Q |
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| T |
28629507 |
atagtctttgtatcaacccccaatccttaactgtgtcaagtgtaatatttatggttttg |
28629565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 29837179 - 29837229
Alignment:
| Q |
223 |
gtgacatgttgggaaatttggaggaataggaatgaggagatatttcaaaat |
273 |
Q |
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| T |
29837179 |
gtgatatgttgggagatttggaagaacagaaatgaggagatatttcaaaat |
29837229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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