View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16807_high_22 (Length: 217)
Name: NF16807_high_22
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16807_high_22 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 31536321 - 31536537
Alignment:
| Q |
1 |
catttgatgtaggaactaacaattttctcaactctaaaacaaaagcaaatagcccttattatgggattgattttcacatttcatttcccacaggaaggtt |
100 |
Q |
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| T |
31536321 |
catttgatgtaggaactaacaattttctcaactctaaaacaaaagcaaatagcccttattatgggattgattttcacatttcatttcccacaggaaggtt |
31536420 |
T |
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| Q |
101 |
tagcaatggtctcaacactgctgaccaaattggtaaataaatttggacaatgttgaattttcatataaataaaatatcttatgagatttcattgattatg |
200 |
Q |
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| T |
31536421 |
tagcaatggtctcaacactgctgaccaaattggtaaataaatttggacaatgttgaattttcatataaataaaatatcttatgagatttcattgattatg |
31536520 |
T |
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| Q |
201 |
ttgcattaattgttttt |
217 |
Q |
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| T |
31536521 |
ttgcattaattgttttt |
31536537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 31533051 - 31532913
Alignment:
| Q |
1 |
catttgatgtaggaactaacaattttctcaactctaaaacaaaagcaaatagcccttattatgggattgattttcacatttcatttcccacaggaaggtt |
100 |
Q |
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|||||||||| ||||| ||||||||| ||||||||| ||||||| ||| |||||||||||| |||||||||| |||| || |||| |||||||| |
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| T |
31533051 |
catttgatgttggaaccaacaattttatcaactctactgcaaaagccaatgtcccttattatggaattgattttccttattcagttgccactggaaggtt |
31532952 |
T |
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| Q |
101 |
tagcaatggtctcaacactgctgaccaaattggtaaata |
139 |
Q |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
31532951 |
cagcaatggactcaacactgctgaccaaataggtaaata |
31532913 |
T |
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