View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16807_high_8 (Length: 358)
Name: NF16807_high_8
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16807_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 36474389 - 36474730
Alignment:
| Q |
1 |
ataactgcccatatcatctctgatacacatgcctacaccaacaaggtgatgaaccacatcaaatgaagcatctgtgttacatttaaaacaagggcttttt |
100 |
Q |
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| T |
36474389 |
ataactgaccatatcatctctgatacacatgcctacaacaacaaggtgatgaaccacatcaaatgaagcatctgtgttacatttaaaacaagggcttttt |
36474488 |
T |
|
| Q |
101 |
ccacctaatagcagcctgcaatctgctgtccgcaccagacctggtgttagcttcattagcaggtttttgagtgagctgccaattcaacaaaatctgtctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
36474489 |
ccacctaatagcagcctgcaatctgctgtccgcaccagacctggtgttagcttcattagcaggtttttgcatgagctgccaattcaacaaaagctgtctt |
36474588 |
T |
|
| Q |
201 |
ccttgcgtaacaacctgtgtatgcgtctcttgaacgttatcccagactcgcttgctacgctgctgccaaatactccacattaccccccaaaaaacgctgc |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36474589 |
ccttgcgtaaaaacctgtgtatgcgtctcttgaacgttatcccagactcgcttgctacgctgctgccaaatactccacattaccccccaaaaaacgctgc |
36474688 |
T |
|
| Q |
301 |
gttctgagctgaaactgtacactgaaagcttgtgcacaggtt |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
36474689 |
gttctgagctgaaactgtacactgaaagcttgtgcacaggtt |
36474730 |
T |
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