View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16807_high_9 (Length: 283)

Name: NF16807_high_9
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16807_high_9
NF16807_high_9
[»] chr4 (3 HSPs)
chr4 (17-103)||(5832782-5832868)
chr4 (31-73)||(5828901-5828943)
chr4 (31-71)||(5822936-5822976)
[»] chr7 (2 HSPs)
chr7 (16-86)||(24038420-24038489)
chr7 (239-283)||(7328726-7328770)
[»] chr6 (1 HSPs)
chr6 (250-283)||(13851727-13851760)
[»] chr8 (1 HSPs)
chr8 (251-283)||(34897077-34897109)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 5832868 - 5832782
Alignment:
Q  17 aaaagtgccctaacattgttgaccttttcttcaatatggctgctggagagggtaagaatattgttcatttttaatcttacactatca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5832868 aaaagtgccctaacattgttgaccttttcttcaatatggctgctggagagggtaagaatattgttcatttttaatcttacactatca 5832782  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 5828901 - 5828943
Alignment:
Q  31 attgttgaccttttcttcaatatggctgctggagagggtaaga 73  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||    
T  5828901 attgttgaccttttctttaatttggctgctggagaaggtaaga 5828943  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 5822976 - 5822936
Alignment:
Q  31 attgttgaccttttcttcaatatggctgctggagagggtaa 71  Q
    ||||||||||||||||| ||| ||||||||||||| |||||    
T  5822976 attgttgaccttttctttaatttggctgctggagaaggtaa 5822936  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 24038489 - 24038420
Alignment:
Q  16 caaaagtgccctaacattgttgaccttttcttcaatatggctgctggagagggtaagaatattgttcattt 86  Q
    ||||| ||||| || ||||||||||||| ||||||| |||||||||| || |||||| ||||| |||||||    
T  24038489 caaaattgccccaatattgttgacctttacttcaatttggctgctggggaaggtaag-atatttttcattt 24038420  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 7328770 - 7328726
Alignment:
Q  239 gacacatatattgacacgtcgataccgctaataatttgagaaaat 283  Q
    |||||| | ||| |||||||||||| |||||||||||||||||||    
T  7328770 gacacagacattaacacgtcgatactgctaataatttgagaaaat 7328726  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 13851727 - 13851760
Alignment:
Q  250 tgacacgtcgataccgctaataatttgagaaaat 283  Q
    ||||||||||| ||||||||||||||||||||||    
T  13851727 tgacacgtcgacaccgctaataatttgagaaaat 13851760  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 34897077 - 34897109
Alignment:
Q  251 gacacgtcgataccgctaataatttgagaaaat 283  Q
    |||||||||| ||||||||||||||||||||||    
T  34897077 gacacgtcgacaccgctaataatttgagaaaat 34897109  T

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