View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16807_low_4 (Length: 532)
Name: NF16807_low_4
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16807_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 279 - 519
Target Start/End: Original strand, 52878733 - 52878976
Alignment:
| Q |
279 |
cacatccattgcttccattttttagttatttggtctcggtctacttccccttctatttgcttgtattctcggatctctaacacaattttcttcctcgtta |
378 |
Q |
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| T |
52878733 |
cacatccattgcttccattttttagttatttggtctcggtctacttccccttctatttgcttgtattctcggatctctaacacaattttcttcctcgtta |
52878832 |
T |
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| Q |
379 |
caattttttagttatttagttatttgtttgtgatcaacatggatcacatatattt---aacaagttggaaagatatttaattatttttgaacttgctagc |
475 |
Q |
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| T |
52878833 |
caattttttagttatttagttatttgtttgtgatcaacatggatcacatatatttaacaacaagttggaaatatatttaattatttttgaacttgctagc |
52878932 |
T |
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| Q |
476 |
ttgttgtcgtttggattgatattcttgcatgagcatgatgatta |
519 |
Q |
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| T |
52878933 |
ttgttgtcgtttggattgatattcttgcataagcatgatgatta |
52878976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 52878976 - 52878733
Alignment:
| Q |
14 |
taatcatcatgctcatgcaagaatatcaatccaaacgacaacaagctagcaagttcaaaaataattaaatatctttccaacttgtt---aaatatatgtg |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
52878976 |
taatcatcatgcttatgcaagaatatcaatccaaacgacaacaagctagcaagttcaaaaataattaaatatatttccaacttgttgttaaatatatgtg |
52878877 |
T |
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| Q |
111 |
atccatgttgatcacaaacaaataactaaataactaaaaaattgtaacgaggaagaaaattgtgttagagatccgagaatacaagcaaatagaaggggaa |
210 |
Q |
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| T |
52878876 |
atccatgttgatcacaaacaaataactaaataactaaaaaattgtaacgaggaagaaaattgtgttagagatccgagaatacaagcaaatagaaggggaa |
52878777 |
T |
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| Q |
211 |
gtagaccgagaccaaataactaaaaaatggaagcaatggatgtg |
254 |
Q |
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| T |
52878776 |
gtagaccgagaccaaataactaaaaaatggaagcaatggatgtg |
52878733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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