View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16807_low_5 (Length: 518)
Name: NF16807_low_5
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16807_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 64 - 512
Target Start/End: Complemental strand, 3950951 - 3950503
Alignment:
| Q |
64 |
taacggtcatagcaataagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatattgaagaagcaatgtcattg |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950951 |
taacggtcatagcaataagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatattgaagaagcaatgtcattg |
3950852 |
T |
|
| Q |
164 |
acctttctctccaactcatacacattcaccctccagcaaagcattggatttgtatattagacaaatattaatttcatcattattcaggtataaaatagca |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3950851 |
acctttctctccaactcatacacattcaccctccagcaaagcattggatttgtatattagacaaatattaatctcatcattattcaggtataaaatagca |
3950752 |
T |
|
| Q |
264 |
ggggcaaaagttgacttgccaaacagtacacatgctggaaatatctgtatgaatcgtgtatcatcaacaaaaacaaaatttgtatgaacatgtgacatgc |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950751 |
ggggcaaaagttgacttgccaaacagtacacatgctggaaatatctgtatgaatcgtgtatcatcaacaaaaacaaaatttgtatgaacatgtgacatgc |
3950652 |
T |
|
| Q |
364 |
actttcgtttaagttttttgataaaatttaataatggtggttgaatgaatttgaatcctcacaattcaaacactccatcaatttctcaccatctatctct |
463 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950651 |
actttcctttaagttttttgataaaatttaataatggtggttgaatgaatttgaatcctcacaattcaaacactccatcaatttctcaccatctatctct |
3950552 |
T |
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| Q |
464 |
taattaaccttcacnnnnnnnnnagattttgtaatcatttttcatctct |
512 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
3950551 |
taattaaccttcactttttttttagattttgtaatcatttttcatctct |
3950503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 4215927 - 4216023
Alignment:
| Q |
72 |
atagcaataagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatattgaagaagcaatgtcattgacctt |
168 |
Q |
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| T |
4215927 |
atagccataagaaagctataacggaacttcaatgctttggccgctagagatctgattcaactttctatcatatggaagaagcaatgtcattgacctt |
4216023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 3796807 - 3796899
Alignment:
| Q |
76 |
caataagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatattgaagaagcaatgtcattgacctt |
168 |
Q |
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| T |
3796807 |
caataagaaagctataacggaacttcaatgctttggccgctagtgatctgattcaactttctatcatatggaagaagcaatgtcattgacctt |
3796899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 4014324 - 4014408
Alignment:
| Q |
84 |
aagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatattgaagaagcaatgtcattgacctt |
168 |
Q |
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|||||||||| |||||||||| ||| ||||||| ||||||||||||| |||||| ||||| |||||| ||||||||||||||| |
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| T |
4014324 |
aagcaatttcaaaccttcaatgctttagctgctatagatctgattcaagtttctctcatatgaaagaagtaatgtcattgacctt |
4014408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 316
Target Start/End: Original strand, 4028039 - 4028182
Alignment:
| Q |
176 |
aactcatacacattcaccctccagcaaagcattggatttgtatattag---acaaatattaatttcatcattattcaggtataaaatagcaggggcaaaa |
272 |
Q |
| |
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|||| |||||||||||| |||| || |||||| ||| ||||||||| | |||||||||| ||| ||||||| | |||||||||||||||||||| |
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| T |
4028039 |
aactaatacacattcacactcccacagagcattagatctgtatattattaaaaaaatattaatgtcaccattatttaaatataaaatagcaggggcaaac |
4028138 |
T |
|
| Q |
273 |
gttgacttgccaaacagtacacatgctggaaatatctgtatgaa |
316 |
Q |
| |
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||||| |||| |||| | ||||||||||| |||||||||||| |
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| T |
4028139 |
gttgagttgcttaacaatttacatgctggaattatctgtatgaa |
4028182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 3961159 - 3961099
Alignment:
| Q |
84 |
aagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttctcccatat |
144 |
Q |
| |
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|||||||| || |||||||||| ||||||||||||||||||| |||||||||||| ||||| |
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| T |
3961159 |
aagcaattactaaccttcaatgatttggctgctagagatctgtttcaactttctctcatat |
3961099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 4027943 - 4027999
Alignment:
| Q |
80 |
aagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttc |
136 |
Q |
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|||||||||||| |||||||| |||| ||||||||||||||||||||||| |||||| |
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| T |
4027943 |
aagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttc |
4027999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 3796915 - 3796952
Alignment:
| Q |
176 |
aactcatacacattcaccctccagcaaagcattggatt |
213 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||| |
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| T |
3796915 |
aactcatacacattcaccttcctgcaaagcattggatt |
3796952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 4221238 - 4221287
Alignment:
| Q |
84 |
aagcaatttctgaccttcaatgttttggctgctagagatctgattcaact |
133 |
Q |
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|||||||| |||||||| |||| |||| ||||||||||||||||||||| |
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| T |
4221238 |
aagcaattactgaccttaaatgctttgtttgctagagatctgattcaact |
4221287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 4028244 - 4028304
Alignment:
| Q |
390 |
tttaataatggtggttgaatgaatttgaatcctcacaattcaaacactccatcaatttctc |
450 |
Q |
| |
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|||| ||||| |||||||| |||||| ||| ||| |||||||||| || |||||||||||| |
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| T |
4028244 |
tttattaatgttggttgaaagaatttaaattctctcaattcaaactcttcatcaatttctc |
4028304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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