View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16807_low_7 (Length: 427)
Name: NF16807_low_7
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16807_low_7 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 46995192 - 46995618
Alignment:
| Q |
1 |
tccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattttgcaatagccagatgaatcttccatgctg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
46995192 |
tccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattttgcaatagctagatgaatcttccatgatg |
46995291 |
T |
|
| Q |
101 |
ccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaaaatattccttaggaagagacggttccat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46995292 |
ccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcgtaaactgaattcccaaaatattccttaggaagagacggttccat |
46995391 |
T |
|
| Q |
201 |
tctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttatagatctccaaactagtgcagataaagat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46995392 |
tctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttatagatctccaaactagtgcagataaagat |
46995491 |
T |
|
| Q |
301 |
tgaaacgaagagattttcgttgtctcgcactctttgtctgcctttgctttaagttttgctatagactctgctgaaaaatggaagattctctctctcaaaa |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46995492 |
tgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttgagttttgctataaactctgctgaaaaatggaagattctctctctcaaaa |
46995591 |
T |
|
| Q |
401 |
taggtgcttcatatctatgaataaact |
427 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
46995592 |
taggtgcttcatatctatgaataaact |
46995618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 70 - 427
Target Start/End: Original strand, 46980447 - 46980804
Alignment:
| Q |
70 |
tttgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcc |
169 |
Q |
| |
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||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||| ||| || ||||||| |||||| |||||| |||||||| |
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| T |
46980447 |
tttgcaatagccacatgaattttccatgctgcccatcctagatcattctccagcaactctcctaccgtcgtttcagcactcactacataaagtgaattcc |
46980546 |
T |
|
| Q |
170 |
caaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagt |
269 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||||| ||||||||| | || |||||| |||| || |||| |
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| T |
46980547 |
caaaatattccttaggaagaggtggttccattcttgttcggttgtttgtagccattttgcaagttgttctctgaccgtgttgtagttgacgtgcatgagt |
46980646 |
T |
|
| Q |
270 |
tatagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtctgcctttgctttaagttttgctatagactct |
369 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||| ||||| |||| | ||||| | ||||||||||||||||||||||||||| || |
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| T |
46980647 |
tatagatctccaaactaatgctgataaagattgaaacgaagaaattttgtttgtattagactctgcatttgcctttgctttaagttttgctatagattcc |
46980746 |
T |
|
| Q |
370 |
gctgaaaaatggaagattctctctctcaaaataggtgcttcatatctatgaataaact |
427 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| ||||||||| |||| ||||| |
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|
| T |
46980747 |
actgaaaaatggaagattctctctcttaaaatgggtgtttcatatctgtgaacaaact |
46980804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 63 - 427
Target Start/End: Original strand, 46997514 - 46997878
Alignment:
| Q |
63 |
atcatattttgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaact |
162 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||| ||||||| |||| |||||||| || ||| |||||||||| |||||||| || | |
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| T |
46997514 |
atcataatttgcaatagccaggtgaatcttccatgctgcccatcctagatcattttccagcaattcccctaccgttgtttcagccctcactgcgtagatg |
46997613 |
T |
|
| Q |
163 |
gaattcccaaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgca |
262 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||| | || |||| |||| |
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| T |
46997614 |
gaattcccaaaatattccttaggaagaggtggttccattctcgttcggttgtttacggccaatttgcaagttgttcgttgaccttgttgtaactgacgtg |
46997713 |
T |
|
| Q |
263 |
cacgagttatagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtctgcctttgctttaagttttgctat |
362 |
Q |
| |
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|||| |||| |||||||||||||||||| ||||| |||||||| ||||||||||| |||| || ||||||||| || |||||||||||||| || || |
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| T |
46997714 |
cacgcgttagagatctccaaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaat |
46997813 |
T |
|
| Q |
363 |
agactctgctgaaaaatggaagattctctctctcaaaataggtgcttcatatctatgaataaact |
427 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46997814 |
agactctgctgaaaaatgaaatattctctctctcaaaataggtgtttcatatctatgaataaact |
46997878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 82 - 427
Target Start/End: Original strand, 46974470 - 46974815
Alignment:
| Q |
82 |
agatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaaaatattcct |
181 |
Q |
| |
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|||||||| |||||||||||| ||||||| ||||||||||||| || ||| || ||||||| ||||| |||| || |||||||||||||||||||| |
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| T |
46974470 |
agatgaattttccatgctgcccatcctagatcattctccagcaattcccctaccgtcgtttcagcactcaccgcatgaagtgaattcccaaaatattcct |
46974569 |
T |
|
| Q |
182 |
taggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttatagatctcca |
281 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||| |||||| ||||||||| ||||||||| | || |||||| |||| ||||||||||||||||||| |
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| T |
46974570 |
tcggaagaggtggttccattctcgttcggttgtttgtagccagtttgcaagttgttctctgaccgtgttgtagttgacgtgcacgagttatagatctcca |
46974669 |
T |
|
| Q |
282 |
aactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtctgcctttgctttaagttttgctatagactctgctgaaaaatgg |
381 |
Q |
| |
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||||| ||| |||||||||||||||||||| ||||| |||| | |||||| | |||||||||||| ||||| ||||||||| |||||||||||| |
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| T |
46974670 |
aactaatgctgataaagattgaaacgaagaaatttttcttgtattagactcttcatttgcctttgctttcagtttcattatagactcagctgaaaaatgg |
46974769 |
T |
|
| Q |
382 |
aagattctctctctcaaaataggtgcttcatatctatgaataaact |
427 |
Q |
| |
|
|||||||||||||| ||||| | || ||||||||| |||| ||||| |
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|
| T |
46974770 |
aagattctctctcttaaaatggatgtttcatatctgtgaacaaact |
46974815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 73 - 427
Target Start/End: Original strand, 47001187 - 47001542
Alignment:
| Q |
73 |
gcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaa |
172 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| ||||| | |||||| ||| ||||||||||| | ||||| | || |||||||||| |
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| T |
47001187 |
gcaatagccagatgaatcttccatgctgcccatcctaaatcattcctgaacaactcccctactgttgtttcagcaccaactgcgtgaatcgaattcccaa |
47001286 |
T |
|
| Q |
173 |
aatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttat |
272 |
Q |
| |
|
||||||| || ||||||| |||||| ||||| ||||||||||||| || ||| || ||||| ||||| ||| | ||| || ||| |||||||||| |
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|
| T |
47001287 |
aatattcatttggaagaggcggttctattctagttcggttgtttaaagacaacttacaagttgttctttgaccgcattgttgttgacatgcacgagttat |
47001386 |
T |
|
| Q |
273 |
agatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtctgcctttgc-tttaagttttgctatagactctgc |
371 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||| || ||||| ||||||||| |||||||||||||| |
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|
| T |
47001387 |
agatctccaaactagtgctgataaagattgaaacgaagagattttgtttgtatcaaactctttgttagcttttgcctttaagtttcgctatagactctgc |
47001486 |
T |
|
| Q |
372 |
tgaaaaatggaagattctctctctcaaaataggtgcttcatatctatgaataaact |
427 |
Q |
| |
|
|||||||||||| || |||||||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
47001487 |
tgaaaaatggaatatcctctctctcaaagtaggtgcttgatatctgtgaataaact |
47001542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 397
Target Start/End: Original strand, 46951212 - 46951346
Alignment:
| Q |
263 |
cacgagttatagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtctgcctttgctttaagttttgctat |
362 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||| || ||||||||||| |||| | |||| | | ||||| ||||| | ||||| || |
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| T |
46951212 |
cacgagttatacctctccaaacatgtgctgataaagattggaatgaagagattttgtttgtattagactccatattggccttagctttcaactttgcaat |
46951311 |
T |
|
| Q |
363 |
agactctgctgaaaaatggaagattctctctctca |
397 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||| |
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| T |
46951312 |
agactctgctgtaaaatggaagaatctctctctca |
46951346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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