View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16807_low_8 (Length: 413)
Name: NF16807_low_8
Description: NF16807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16807_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 36424309 - 36423927
Alignment:
| Q |
17 |
tatggacaagatagtctcctctctacagagattattattggaagtattaatctcagcacaattccctaaacaagaatatttttcaaactaaataaactta |
116 |
Q |
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| T |
36424309 |
tatggacaagatagtctcctctctacagagattattattggaagtattaatctcagcacaattccctaaacaagaatatttttcaaactaaataaactta |
36424210 |
T |
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| Q |
117 |
attttcaacacctaccttggatctgattagcccatctgtttgaaattcccaatccatgatatagtcatagtttgccactgctgctgccattctaaccacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424209 |
attttcaacacctaccttggatctgattagcccatctgtttgaaattcccaatccatgatatagtcatagtttgccactgctgctgccattctaaccacc |
36424110 |
T |
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| Q |
217 |
agtgtcacctttggcctcacttctgtaacctgccacaatagcataaactcaaaataagtaatcaaagtataaaaatgaaaatctgtacatattacaataa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36424109 |
agtgtcacctttggcctcacttctgtaacctgccacaatagcataaactcaaaataagtaatcaaagtataaaaatgaaaatatgtacatattacaataa |
36424010 |
T |
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| Q |
317 |
gaattaaactcttagaataaaatagaggatttaacattcctagtttgatgaatctgtaataagacagtgattatgtcatgagt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424009 |
gaattaaactcttagaataaaatagaggatttaacattcctagtttgatgaatctgtaataagacagtgattatgtcatgagt |
36423927 |
T |
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