View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_high_10 (Length: 396)
Name: NF16808_high_10
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_high_10 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: scaffold0141 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 26 - 396
Target Start/End: Complemental strand, 8285 - 7899
Alignment:
| Q |
26 |
atcaatgacgtcactaattgttttatgacctaaatgttgagtctaataggatagactgatactttatgagagagttaatccatattgcacacgtgttcgc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8285 |
atcaatgacgtcactaattgttttatgacctaaatgttgaatctattaggatagactgatactttatgagagagttaatccattttgcacacgtgttcgc |
8186 |
T |
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| Q |
126 |
ttcgctacatcaaaatttcccactcacccgcctactttattgttttata------cttattttttctcattcttaatttacagtgatgccttttatgcat |
219 |
Q |
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||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
8185 |
ttc-----atcaaaatttcccactcacctgcctacttgattgttttataggagtacttattttttctcattcttaatttacagtgatgcctttgatgttt |
8091 |
T |
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| Q |
220 |
gcctt---------------ttaaacaagcagtttttccttctgcagaatatttatgttttccactttacccc-tttgagagaccaaacatgccacttca |
303 |
Q |
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| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8090 |
ccgttaaaaaaaatcaaattttaaacaagcagtttttccttctgcagaacatttatgttttccactttaccccctttgagagaccaaacatgccacttca |
7991 |
T |
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| Q |
304 |
tcattttggtgttgaattgaagagatgttgttctcttgtttgtgggatagatgaaatttttaaaatttgcttctttctcatcttcgtctccca |
396 |
Q |
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||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7990 |
tcattttggtgttgaattgaagagatgctgttctc-tgtctgtgggatagatgaaattttttaaatttgcttctttctcatcttcgtctccca |
7899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 8429313 - 8429513
Alignment:
| Q |
16 |
caataatctgatcaatgacgtcactaattgttttatgacctaaatgttgagtctaataggatagactgatactttatgagagagttaatccatattgcac |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8429313 |
caataatttgatcaatgacgtcactaattgttttatgacctaaatgttgagtctaataggatagactgatactttatgagagagttaatccatattgcac |
8429412 |
T |
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| Q |
116 |
acgtgttcgcttcgctacatcaaaatttcccactcacccgcctactttattgttttatacttattttttctcattcttaatttacagtgatgccttttat |
215 |
Q |
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| T |
8429413 |
acttgttcgcttcgctacatcaaaatttcccactcacctgcctacttgattgttttatacttattttttctcattcttaatttacactgatgccttttat |
8429512 |
T |
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| Q |
216 |
g |
216 |
Q |
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| T |
8429513 |
g |
8429513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 8450102 - 8449903
Alignment:
| Q |
16 |
caataatctgatcaatgacgtcactaattgttttatgacctaaatgttgagtctaataggatagactgatactttatgagagagttaatccatattgcac |
115 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8450102 |
caataatctgatcaatgacgtgactaattgttttatgacctaaatgttgagtctaataggatagactgatactttatgagagagttaatccatattgcac |
8450003 |
T |
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| Q |
116 |
acgtgttcgcttcgctacatcaaaatttcccactcacccgcctactttattgttttatacttattttttctcattcttaatttacagtgatgccttttat |
215 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8450002 |
acttgttcgcttcgctacatcaaaatttcccactcacctgcctacttgattgttttatacttat-ttttctcattcttaatttacagtgatgccttttat |
8449904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 256 - 396
Target Start/End: Original strand, 8429508 - 8429648
Alignment:
| Q |
256 |
tttatgttttccactttacccctttgagagaccaaacatgccacttcatcattttggtgttgaattgaagagatgttgttctcttgtttgtgggatagat |
355 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8429508 |
tttatgttttccactttacccctttgagagaccaagcatgccacttcatcattttggtgttgaattgaagagatgctgttctcttgtttgtgggatagat |
8429607 |
T |
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| Q |
356 |
gaaatttttaaaatttgcttctttctcatcttcgtctccca |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
8429608 |
gaaatttttaaaatttgcttctttctcatcttcgtctccca |
8429648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 256 - 396
Target Start/End: Complemental strand, 8449908 - 8449769
Alignment:
| Q |
256 |
tttatgttttccactttacccctttgagagaccaaacatgccacttcatcattttggtgttgaattgaagagatgttgttctcttgtttgtgggatagat |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
8449908 |
tttatgttttccactttacccctttgagagaccaaacatgccacttcatcattttggtgttgaattgaagagatgctgttctc-tgtttgtgggatagat |
8449810 |
T |
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| Q |
356 |
gaaatttttaaaatttgcttctttctcatcttcgtctccca |
396 |
Q |
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| T |
8449809 |
aaaatttttaaaatttgcttctttctcatcttcgtctccca |
8449769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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