View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_high_12 (Length: 367)
Name: NF16808_high_12
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_high_12 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 50153735 - 50153436
Alignment:
| Q |
19 |
aatacagcctaacaacctaagcttcattttatcagtacttttttgaatgcttttcttcactttatacgtttcaaataaggacatatgttctacaacagaa |
118 |
Q |
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| T |
50153735 |
aatacagcctaacaacctaagcttcattttatcagtacttttttgaatgcttttcttcactttatacgtttcaaataaggacatatgttctacaacagaa |
50153636 |
T |
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| Q |
119 |
aaacctttagaccgacaaatgatttaaggagcttgtaaataaggcatagataaaaattaggcggtatactcattcattatggagtcactagaaccca--c |
216 |
Q |
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| T |
50153635 |
aaagctttagactggccaatgatttaaggagcttgt-aataaggcatagataaaaattaggcggtatacccattcattatggagtcactagaacccactc |
50153537 |
T |
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| Q |
217 |
tactatatatacatgtttcttgaacattttgtttggtttgtcttggtaaaatttacatagcaagtccttcattgatttgtttcatccatatattagtata |
316 |
Q |
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| T |
50153536 |
tactatatatacatgtttattgaacattttgtttggtttgtcttggtaaaatttacatagcaagtccttcactgatttgtttcatccatatattagtata |
50153437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 17831145 - 17831192
Alignment:
| Q |
320 |
tacccactcttctcaatccaaagtcatgtgaaccagccatagcaaaac |
367 |
Q |
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| T |
17831145 |
tacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaac |
17831192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 7135026 - 7135073
Alignment:
| Q |
320 |
tacccactcttctcaatccaaagtcatgtgaaccagccatagcaaaac |
367 |
Q |
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| T |
7135026 |
tacccactcttctcgatccaaaggcatctgaaccagccatagcaaaac |
7135073 |
T |
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