View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16808_high_13 (Length: 360)
Name: NF16808_high_13
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 29250199 - 29250464
Alignment:
| Q |
1 |
aggactcaaatccacttcttctcttttgcaagcagccaaactgacagctcccgtgtgatctcttatgactagtcaccaaccgcaaagccatcattaaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
29250199 |
aggactcaaatccacttcttctcttttgcaagcagccaaactgacagctcccgtgtgatctcttatgactagtcgccaaccgtaaagccatcattaaagc |
29250298 |
T |
|
| Q |
101 |
aacctgcatctacattcagttttgcccagttatcttgaggaggaaatcagttcgctacagttgggattggttctgtttgagggacaggtttgcgattagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29250299 |
aacctgcatctacattcagttttgcccagttatcttgaggaggaaaccagttcgctacagctgggattggttctgtttgagggacgggtttgcgattagc |
29250398 |
T |
|
| Q |
201 |
ttcattgaagtcacatatgagtcttgtagcattgttgaccctaaggttttgagtcctttacccttt |
266 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29250399 |
ttcattgaagtcacatacgagtcttgtagcattgttgaccctaaggttttgagtcctttacccttt |
29250464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 31438750 - 31438513
Alignment:
| Q |
1 |
aggactcaaatccacttcttctcttttgcaagcagccaaactgacagctcccgtgtgatctcttatgactagtcaccaacc-gcaaagccatcattaaag |
99 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||| ||||||||||| || | |||||||| |||||||||| |||||| | ||| |||||||||||| |
|
|
| T |
31438750 |
aggactcaactccacttcttctcttttacacgcagtaaaactgacagccccaatatgatctctaatgactagtccccaaccggtaaatccatcattaaag |
31438651 |
T |
|
| Q |
100 |
caacctgcatctacattcagttttgcccagttatcttgaggaggaaatcagttcgctacagttgggattggttctgtttgagggacaggtttgcgattag |
199 |
Q |
| |
|
|||| |||||||||||| | ||||| | |||||| ||||||||||| ||||| || || ||| ||||| | | |||| | ||||||||| |||| | |
|
|
| T |
31438650 |
caacttgcatctacatttacttttgtctagttattttgaggaggaagccagtttgcagcacctggaattggaacagattgaagaacaggtttgtgattgg |
31438551 |
T |
|
| Q |
200 |
cttcattgaagtcacatatgagtcttgtagcattgttg |
237 |
Q |
| |
|
||||| |||||||||| |||||| |||||||| ||||| |
|
|
| T |
31438550 |
cttcaatgaagtcacaaatgagtgttgtagcactgttg |
31438513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 31193653 - 31193465
Alignment:
| Q |
50 |
cccgtgtgatctcttatgactagtcaccaaccgc-aaagccatcattaaagcaacctgcatctacattcagttttgcccagttatcttgaggaggaaatc |
148 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||| | |
|
|
| T |
31193653 |
cccgtatgatctcttatgactagtccccaaccggtaaatccatcattaaaacaacctgcatctacattcaattttgtccagttattttgaggaggaaacc |
31193554 |
T |
|
| Q |
149 |
agttcgctacagttgggattggttctgtttgagggacaggtttgcgattagcttcattgaagtcacatatgagtcttgtagcattgttg |
237 |
Q |
| |
|
||||||| || ||| ||||| | |||||| |||||| ||||||| ||||||| ||||||||| |||| | |||||| ||||||| |
|
|
| T |
31193553 |
agttcgcggcacctggaattggaacatattgaggcacaggtctgcgattggcttcatcgaagtcacaaatgaattttgtagaattgttg |
31193465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University