View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16808_high_14 (Length: 352)
Name: NF16808_high_14
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 46215236 - 46215559
Alignment:
| Q |
20 |
aatatttagatcaaccacaaaacgaaacctatgtgatttaataagacttggataatttttattttcttttcatgtaacggagaataaattgaaaaaagta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46215236 |
aatatttagatcaaccacaaaacgaaacctatgtgatttaataagacttggataatttttattttcttttcatgtaacggagaataaattgaaaaaagta |
46215335 |
T |
|
| Q |
120 |
gtatgctactattaccaatgnnnnnnnctt-aaaaagtttattattaacacgggtaacaaaaactactctnnnnnnnctggtgaaaagacaatggatgaa |
218 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46215336 |
gtatgctactattaccaatgtttttttcttaaaaaagtttattattaacacaggtaacaaaaactactctaaaaaaactggtgaaaagacaatggatgaa |
46215435 |
T |
|
| Q |
219 |
tgagtttgttagtttacacagtgaaaacgggtcgaaaatactccattgtttcgctttcatcaccaaagaaaaatgaaaaatgaatttagcagcataaagc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
46215436 |
tgagtttgttagtttacacagtgaaaacgggtcgaaaatactccattgtttcgctttcatcaccaaagaaaactgaaaaatgaatttagcagcat-aagc |
46215534 |
T |
|
| Q |
319 |
aaagagaatatttcatcttcttctc |
343 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
46215535 |
aaagagaatatttcatcttcatctc |
46215559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University