View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_high_18 (Length: 282)
Name: NF16808_high_18
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 28 - 272
Target Start/End: Original strand, 15815673 - 15815929
Alignment:
| Q |
28 |
taacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacatgtaatatggtgattgtgcatttgttaaggtgaagag |
127 |
Q |
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| T |
15815673 |
taacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacctgtaatatggtgattgtgcatttgttaaggtgaagag |
15815772 |
T |
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| Q |
128 |
aaaaat------------gaagcttagaaaccttgtagtacaagtcatgttcatttgtgacatgtttatggttaagtttttactttcaactattttcaaa |
215 |
Q |
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| T |
15815773 |
aaaaatatgaagtagaatgaagcttagaaaccttgcagtacaagtcatgttcatttgtgacatgtttatggttaagtttttactttcaactatttcccaa |
15815872 |
T |
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| Q |
216 |
aatagtagggagacatatatgtatgttaacagaaaagtttatgtattctgtgctgct |
272 |
Q |
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| T |
15815873 |
aacagtagggagacatatatgtatgttaacagaaaagtttatgtattctgtgctgct |
15815929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 15802180 - 15802270
Alignment:
| Q |
27 |
ttaacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacatgtaatatggtgattgtgcatttgtta |
117 |
Q |
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| T |
15802180 |
ttaacgttggattggtatgaagtgttaagtgttttttctgttgaattctcgcaaatactgtacaagtaaaatggtgattgtgcagttgtta |
15802270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 15802297 - 15802334
Alignment:
| Q |
129 |
aaaatgaagcttagaaaccttgtagtacaagtcatgtt |
166 |
Q |
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| T |
15802297 |
aaaatgaagcttagaaaccttgtagtacaagtcatgtt |
15802334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 15807798 - 15807889
Alignment:
| Q |
26 |
gttaacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacatgtaatatggtgattgtgcatttgtta |
117 |
Q |
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| T |
15807798 |
gttaacgttggattgatatgaagtgttgactgttttttcagtagaattctggcaataactgtacatgtaaaatggtgattgcgcattcgtta |
15807889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 15807918 - 15807953
Alignment:
| Q |
131 |
aatgaagcttagaaaccttgtagtacaagtcatgtt |
166 |
Q |
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| T |
15807918 |
aatgaagcttagaaaccttgtagtacaagtcatgtt |
15807953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 15794500 - 15794535
Alignment:
| Q |
131 |
aatgaagcttagaaaccttgtagtacaagtcatgtt |
166 |
Q |
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| T |
15794500 |
aatgaagcttagaaaccttgtagtataagtcatgtt |
15794535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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