View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_high_27 (Length: 221)
Name: NF16808_high_27
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 35081478 - 35081291
Alignment:
| Q |
20 |
atatgcacctaggaacatgcatttaataaattattgtgctaaaataccnnnnnnntattattcacatttataaacatgtgtaatgaatataattactaca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35081478 |
atatgcacctaggaacatgcatttaataaattattgtgctaaaataccaaaaaaataatattcacatttataaacatgtgtaatgaatgtaattactaca |
35081379 |
T |
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| Q |
120 |
aactaaagttggactcacagagcttgattcttctgcaaatatctcagggatgatcagaaagctttgcagtaaaagaagagctgaagtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35081378 |
aactaaagttggactcacagagcttgattcttctgcaaatatctcagggatgatcagaaagctttgcagtaaaagaagagctgaagtt |
35081291 |
T |
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