View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16808_high_8 (Length: 457)

Name: NF16808_high_8
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16808_high_8
NF16808_high_8
[»] chr1 (3 HSPs)
chr1 (1-449)||(8280792-8281241)
chr1 (1-91)||(35109708-35109797)
chr1 (11-107)||(10996771-10996868)
[»] chr2 (2 HSPs)
chr2 (12-108)||(16388259-16388355)
chr2 (19-109)||(16388670-16388760)
[»] scaffold0076 (1 HSPs)
scaffold0076 (11-108)||(16172-16265)
[»] chr5 (4 HSPs)
chr5 (12-50)||(28537489-28537527)
chr5 (12-108)||(30899668-30899765)
chr5 (12-51)||(2630093-2630132)
chr5 (15-51)||(5611011-5611047)
[»] chr6 (1 HSPs)
chr6 (11-81)||(98998-99069)
[»] chr4 (1 HSPs)
chr4 (37-108)||(873737-873809)
[»] chr3 (1 HSPs)
chr3 (15-51)||(21156298-21156334)


Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 8281241 - 8280792
Alignment:
Q  1 tctaggtctgtttgttgttgcttgagactactttattcattgattactact-cctttaatctacacatctaagttctattggtattattattagtttgaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8281241 tctaggtctgtttgttgttgcttgagactactttattcattgattactatttcctttaatctacacatctaagttctattggtattattattagtttgaa 8281142  T
Q  100 ttcacaacataattcaatataatcgtatatatcaatatcatgttgcgtcaactgtcaaacacaaacttgtgtctaacactgcgatccgcctaatttgaga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8281141 ttcacaacataattcaatataatcgtatatatcaatatcatgttgcgtcaattgtcaaacacaaacttgtgtccaacactgcgatccgcctaatttgaga 8281042  T
Q  200 agaatatatgtgcttcaatgctagacatttacgctagcatccaactaaatacttattcatgtaattgtattcattcatcaatttagtttctccgattatt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  8281041 agaatatatgtgcttcaatgctagacatttacgctagcatccaactaaatacttattcatgtaattgtattcattcattaatttagtttctcggattatt 8280942  T
Q  300 gacgtctatgcgtgagtatcatatctggttacatatttggagtatatattacgtgggttaactttttatacaagttaaaattaagttacttgtgcattta 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8280941 gacgtctatgcgtgagtatcatatctggttacatatttggagtatatattacgtgggttaactttttatacaagttaaaattaagttacttgtgcattta 8280842  T
Q  400 tgcttgcttgattaacgaaaactaattatgctcgttctgtattaccttgg 449  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8280841 tgcttgcttgatgaacgaaaactaattatgctcgttctgtattaccttgg 8280792  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 35109708 - 35109797
Alignment:
Q  1 tctaggtctgtttgttgttgcttgagactactttattcattgattactac-tcctttaatctacacatctaagttctattggtattattatt 91  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||||| ||||||  |||||||||||||||| ||||||| | ||||||    
T  35109708 tctaggtctgtttgttgttgcttgagactactt--tgcattgattactacttcctttcctctacacatctaagttttattggtgtgattatt 35109797  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 10996868 - 10996771
Alignment:
Q  11 tttgttgttgcttgagactactttattcattgattactac-tcctttaatctacacatctaagttctattggtattattattagtttgaattcacaac 107  Q
    ||||||||  |||||| ||||||||||||||||||||||| | ||||| |||||| || |||||| ||||||| | ||| || ||| |||||||||||    
T  10996868 tttgttgtaccttgaggctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 10996771  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 16388355 - 16388259
Alignment:
Q  12 ttgttgttgcttgagactactttattcattgattactac-tcctttaatctacacatctaagttctattggtattattattagtttgaattcacaaca 108  Q
    |||||| |||||||||||||||||||||||||||||||| | ||||  || ||||||||||||| ||| ||| | |||||| ||| ||||||||||||    
T  16388355 ttgttgctgcttgagactactttattcattgattactactttctttgctccacacatctaagtt-tatcggtgtgattatttgttcgaattcacaaca 16388259  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 16388670 - 16388760
Alignment:
Q  19 tgcttgagactactttattcattgattactact-cctttaatctacacatctaagttctattggtattattattagtttgaattcacaacat 109  Q
    ||||||||||||||||| |||||||||||||||   |||  || ||||||||||||| ||||| | | |||||| |||||||||||||||||    
T  16388670 tgcttgagactactttactcattgattactactatttttgctccacacatctaagtt-tattgatgtgattatttgtttgaattcacaacat 16388760  T

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Target: scaffold0076 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 16172 - 16265
Alignment:
Q  11 tttgttgttgcttgagactactttattcattgattactact-cctttaatctacacatctaagttctattggtattattattagtttgaattcacaaca 108  Q
    ||||||||||||||| ||||||     |||||||||||||| |||||  || ||||||||||||| ||||||| | ||||||||||  |||||||||||    
T  16172 tttgttgttgcttgaaactact-----cattgattactacttcctttgctcgacacatctaagttttattggtgtaattattagttcaaattcacaaca 16265  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 28537527 - 28537489
Alignment:
Q  12 ttgttgttgcttgagactactttattcattgattactac 50  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  28537527 ttgttgttgcttgagactactttactcattgattactac 28537489  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 30899765 - 30899668
Alignment:
Q  12 ttgttgttgcttgagactactttattcattgattactactccttta-atctacacatctaagttctattggtat-tattattagtttgaattcacaaca 108  Q
    ||||||||||||||| |||||||  ||||||||||||| | |||||  || ||||||||||||| ||||| ||| | ||||| ||||||||||||||||    
T  30899765 ttgttgttgcttgaggctactttgctcattgattactatttctttagctccacacatctaagttttattgatatgttttatt-gtttgaattcacaaca 30899668  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 2630132 - 2630093
Alignment:
Q  12 ttgttgttgcttgagactactttattcattgattactact 51  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  2630132 ttgttgttgcttgaggctactttattcattgcttactact 2630093  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 5611047 - 5611011
Alignment:
Q  15 ttgttgcttgagactactttattcattgattactact 51  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  5611047 ttgttgcttaagactactttactcattgattactact 5611011  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 99069 - 98998
Alignment:
Q  11 tttgttgttgcttgagactactttattcattgattactac-tcctttaatctacacatctaagttctattgg 81  Q
    ||||||||||||| ||||||||||  |||||||||||||| ||||||| || |||| | |||||| ||||||    
T  99069 tttgttgttgcttaagactactttgctcattgattactacttcctttactccacacgtttaagttttattgg 98998  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 873737 - 873809
Alignment:
Q  37 tcattgattactact-cctttaatctacacatctaagttctattggtattattattagtttgaattcacaaca 108  Q
    ||||||||||| ||| || ||| |||| ||||||||||| ||||||| | |||||| |||| |||||||||||    
T  873737 tcattgattacaacttccattactctatacatctaagttttattggtgtaattatttgtttaaattcacaaca 873809  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 21156334 - 21156298
Alignment:
Q  15 ttgttgcttgagactactttattcattgattactact 51  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  21156334 ttgttgcttaagactactttactcattgattactact 21156298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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