View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16808_low_12 (Length: 378)

Name: NF16808_low_12
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16808_low_12
NF16808_low_12
[»] chr4 (44 HSPs)
chr4 (9-360)||(49085703-49086071)
chr4 (231-334)||(27623586-27623694)
chr4 (237-316)||(30207603-30207683)
chr4 (229-316)||(4071831-4071917)
chr4 (230-315)||(17884018-17884105)
chr4 (231-316)||(49219090-49219177)
chr4 (284-357)||(7730630-7730703)
chr4 (229-299)||(10192233-10192305)
chr4 (230-316)||(52735072-52735160)
chr4 (238-315)||(2996531-2996610)
chr4 (243-328)||(2733283-2733371)
chr4 (274-312)||(11158393-11158431)
chr4 (229-316)||(24929442-24929531)
chr4 (242-313)||(28581945-28582018)
chr4 (232-299)||(55870390-55870459)
chr4 (267-312)||(16494841-16494886)
chr4 (229-270)||(20936082-20936123)
chr4 (237-298)||(24160545-24160608)
chr4 (231-298)||(52926179-52926247)
chr4 (231-270)||(23815321-23815360)
chr4 (230-315)||(39063680-39063762)
chr4 (240-299)||(24443998-24444059)
chr4 (231-265)||(28623240-28623274)
chr4 (238-313)||(46415827-46415904)
chr4 (229-316)||(54325069-54325158)
chr4 (237-299)||(3175908-3175972)
chr4 (271-316)||(11264294-11264339)
chr4 (230-296)||(29373939-29374007)
chr4 (230-263)||(41701528-41701561)
chr4 (271-316)||(42866061-42866106)
chr4 (271-304)||(46797011-46797044)
chr4 (250-299)||(2980515-2980566)
chr4 (258-303)||(11698937-11698984)
chr4 (239-316)||(18628575-18628654)
chr4 (271-315)||(29778788-29778832)
chr4 (243-316)||(30581709-30581784)
chr4 (230-270)||(32724069-32724109)
chr4 (230-291)||(42321936-42321999)
chr4 (240-285)||(46013363-46013410)
chr4 (230-270)||(47970268-47970308)
chr4 (239-316)||(49893274-49893353)
chr4 (230-274)||(50745950-50745994)
chr4 (230-299)||(51630061-51630132)
chr4 (271-315)||(56480341-56480385)
[»] chr7 (26 HSPs)
chr7 (229-316)||(15075117-15075207)
chr7 (229-299)||(1417213-1417285)
chr7 (248-346)||(28340398-28340498)
chr7 (230-315)||(30456483-30456570)
chr7 (237-301)||(5006556-5006622)
chr7 (230-301)||(47004037-47004110)
chr7 (230-292)||(5373175-5373239)
chr7 (237-357)||(36532308-36532431)
chr7 (237-298)||(9527140-9527203)
chr7 (230-314)||(3610774-3610860)
chr7 (232-299)||(18749866-18749928)
chr7 (243-295)||(31338471-31338525)
chr7 (273-316)||(32210262-32210305)
chr7 (260-290)||(1914396-1914426)
chr7 (229-308)||(27492744-27492825)
chr7 (245-315)||(44178958-44179028)
chr7 (230-275)||(396285-396329)
chr7 (229-274)||(7243593-7243638)
chr7 (230-299)||(12110310-12110381)
chr7 (237-298)||(17989073-17989136)
chr7 (271-315)||(18350740-18350784)
chr7 (230-299)||(28613583-28613654)
chr7 (241-298)||(31002722-31002781)
chr7 (230-274)||(31341144-31341188)
chr7 (230-299)||(40689035-40689106)
chr7 (234-291)||(45777228-45777287)
[»] chr2 (41 HSPs)
chr2 (243-315)||(36863658-36863732)
chr2 (230-299)||(17952750-17952821)
chr2 (230-311)||(28933774-28933857)
chr2 (238-334)||(28803520-28803618)
chr2 (230-299)||(5998755-5998822)
chr2 (237-299)||(6988072-6988136)
chr2 (231-333)||(10143123-10143227)
chr2 (230-299)||(43299451-43299523)
chr2 (238-299)||(14666506-14666569)
chr2 (230-293)||(9878737-9878802)
chr2 (240-299)||(11513858-11513919)
chr2 (244-299)||(35485881-35485938)
chr2 (239-298)||(40145421-40145482)
chr2 (230-316)||(5133722-5133810)
chr2 (230-288)||(31740019-31740079)
chr2 (229-299)||(37053543-37053615)
chr2 (230-299)||(43279578-43279647)
chr2 (230-299)||(32694162-32694233)
chr2 (242-311)||(33942112-33942183)
chr2 (237-316)||(35099631-35099713)
chr2 (235-299)||(37292396-37292462)
chr2 (271-313)||(1625893-1625935)
chr2 (244-299)||(5043609-5043666)
chr2 (230-280)||(32098378-32098428)
chr2 (230-313)||(34054936-34055021)
chr2 (243-299)||(6541750-6541807)
chr2 (241-315)||(6993757-6993833)
chr2 (231-296)||(39621904-39621969)
chr2 (230-315)||(656810-656897)
chr2 (230-274)||(3102643-3102687)
chr2 (231-312)||(3673758-3673841)
chr2 (230-295)||(4026767-4026834)
chr2 (272-308)||(5867231-5867267)
chr2 (245-309)||(7103521-7103588)
chr2 (271-299)||(9477945-9477973)
chr2 (267-299)||(10563607-10563639)
chr2 (230-299)||(18962087-18962158)
chr2 (229-282)||(33192142-33192197)
chr2 (271-315)||(33941902-33941946)
chr2 (231-263)||(43199194-43199226)
chr2 (271-315)||(43985036-43985080)
[»] chr5 (26 HSPs)
chr5 (239-346)||(38047857-38047966)
chr5 (231-298)||(39823171-39823240)
chr5 (229-298)||(40097158-40097227)
chr5 (232-315)||(6593252-6593336)
chr5 (230-312)||(14295456-14295540)
chr5 (229-314)||(28586800-28586887)
chr5 (237-314)||(29659309-29659387)
chr5 (231-299)||(18704085-18704154)
chr5 (230-316)||(34690824-34690911)
chr5 (229-299)||(35960363-35960434)
chr5 (244-299)||(41277399-41277456)
chr5 (204-314)||(12595774-12595886)
chr5 (238-316)||(15003546-15003626)
chr5 (231-285)||(35135725-35135781)
chr5 (229-270)||(37063154-37063195)
chr5 (239-292)||(39750102-39750157)
chr5 (239-299)||(26516359-26516421)
chr5 (230-276)||(7096201-7096247)
chr5 (230-315)||(18543229-18543317)
chr5 (237-299)||(9634729-9634793)
chr5 (229-315)||(12425520-12425608)
chr5 (238-316)||(16889693-16889773)
chr5 (237-274)||(32969193-32969230)
chr5 (230-295)||(4855648-4855715)
chr5 (271-315)||(7907874-7907918)
chr5 (271-315)||(34117569-34117613)
[»] chr3 (39 HSPs)
chr3 (231-313)||(10357384-10357468)
chr3 (231-299)||(24235732-24235802)
chr3 (240-299)||(31337450-31337511)
chr3 (237-299)||(1816540-1816604)
chr3 (242-299)||(33307501-33307560)
chr3 (231-295)||(53736173-53736232)
chr3 (238-334)||(48364893-48364991)
chr3 (231-314)||(10101510-10101595)
chr3 (231-314)||(10212435-10212520)
chr3 (271-317)||(23249551-23249597)
chr3 (230-317)||(24887314-24887403)
chr3 (238-299)||(40122802-40122864)
chr3 (231-296)||(54775079-54775145)
chr3 (239-276)||(659897-659934)
chr3 (237-299)||(28306115-28306179)
chr3 (237-299)||(37788817-37788881)
chr3 (230-299)||(22232776-22232847)
chr3 (239-298)||(23530234-23530296)
chr3 (240-293)||(32555036-32555091)
chr3 (230-315)||(44061056-44061143)
chr3 (230-314)||(36646416-36646502)
chr3 (230-298)||(42084301-42084371)
chr3 (230-298)||(43116478-43116548)
chr3 (243-306)||(12923367-12923432)
chr3 (230-264)||(20192692-20192726)
chr3 (231-316)||(24158535-24158621)
chr3 (240-295)||(27792832-27792889)
chr3 (230-317)||(30956657-30956746)
chr3 (230-317)||(30972469-30972558)
chr3 (231-294)||(33882979-33883044)
chr3 (237-316)||(33965521-33965604)
chr3 (231-298)||(48397597-48397666)
chr3 (246-328)||(21872291-21872375)
chr3 (229-299)||(25183037-25183109)
chr3 (230-316)||(38462231-38462319)
chr3 (238-275)||(53457335-53457372)
chr3 (230-270)||(1395621-1395661)
chr3 (271-315)||(39602243-39602287)
chr3 (230-270)||(49586996-49587036)
[»] chr6 (23 HSPs)
chr6 (230-299)||(1402946-1403017)
chr6 (238-345)||(4248916-4249025)
chr6 (230-299)||(2027455-2027526)
chr6 (230-314)||(2117353-2117439)
chr6 (230-298)||(2514652-2514722)
chr6 (231-299)||(4006665-4006735)
chr6 (231-296)||(5328925-5328991)
chr6 (229-316)||(33787777-33787866)
chr6 (230-298)||(5564178-5564249)
chr6 (230-295)||(10452413-10452480)
chr6 (274-314)||(25100039-25100079)
chr6 (271-315)||(31812046-31812090)
chr6 (237-316)||(281880-281961)
chr6 (242-316)||(4420607-4420681)
chr6 (230-313)||(9093591-9093676)
chr6 (230-263)||(5551412-5551445)
chr6 (229-295)||(7354153-7354221)
chr6 (225-295)||(28660813-28660885)
chr6 (242-315)||(1497943-1498018)
chr6 (271-315)||(6647380-6647424)
chr6 (231-263)||(28531628-28531660)
chr6 (286-346)||(31338008-31338068)
chr6 (271-307)||(35099030-35099066)
[»] chr1 (39 HSPs)
chr1 (237-314)||(28467342-28467420)
chr1 (194-299)||(27738229-27738337)
chr1 (230-328)||(40304075-40304174)
chr1 (243-312)||(4548684-4548755)
chr1 (229-334)||(29266161-29266270)
chr1 (241-313)||(5421955-5422029)
chr1 (209-316)||(16322778-16322887)
chr1 (232-296)||(48064261-48064327)
chr1 (230-315)||(1730842-1730928)
chr1 (271-316)||(23902099-23902144)
chr1 (237-315)||(25479538-25479618)
chr1 (231-293)||(29007771-29007835)
chr1 (231-304)||(49517021-49517096)
chr1 (231-315)||(10199441-10199527)
chr1 (231-287)||(15360845-15360903)
chr1 (236-296)||(30371104-30371166)
chr1 (231-299)||(42556680-42556750)
chr1 (243-299)||(45205031-45205089)
chr1 (238-334)||(47002888-47002986)
chr1 (231-299)||(48830125-48830195)
chr1 (230-313)||(5756721-5756806)
chr1 (231-314)||(7273973-7274058)
chr1 (240-287)||(40943445-40943494)
chr1 (230-276)||(42351980-42352026)
chr1 (237-299)||(4363681-4363745)
chr1 (237-299)||(4576762-4576826)
chr1 (241-299)||(10581126-10581186)
chr1 (230-308)||(33185997-33186077)
chr1 (271-316)||(33976679-33976724)
chr1 (237-295)||(46980182-46980242)
chr1 (230-270)||(9507080-9507120)
chr1 (242-299)||(15565881-15565940)
chr1 (249-314)||(25006068-25006135)
chr1 (238-291)||(36151562-36151617)
chr1 (230-295)||(38578477-38578544)
chr1 (271-315)||(39270458-39270502)
chr1 (238-299)||(43420216-43420279)
chr1 (230-296)||(49167046-49167109)
chr1 (271-315)||(49888760-49888804)
[»] chr8 (38 HSPs)
chr8 (232-314)||(10437837-10437920)
chr8 (231-295)||(38561677-38561743)
chr8 (230-316)||(9836886-9836974)
chr8 (285-333)||(2107344-2107392)
chr8 (247-312)||(6864495-6864562)
chr8 (230-299)||(27728070-27728141)
chr8 (238-315)||(31862451-31862530)
chr8 (241-334)||(34770853-34770948)
chr8 (233-276)||(20672725-20672768)
chr8 (230-316)||(4558748-4558836)
chr8 (230-315)||(9956847-9956932)
chr8 (230-316)||(29973031-29973119)
chr8 (258-315)||(10075584-10075643)
chr8 (231-299)||(8799356-8799426)
chr8 (231-270)||(26820150-26820189)
chr8 (273-316)||(30627934-30627977)
chr8 (230-273)||(31315530-31315573)
chr8 (237-357)||(31915260-31915382)
chr8 (237-316)||(11188187-11188268)
chr8 (229-308)||(24558802-24558883)
chr8 (237-316)||(28769371-28769452)
chr8 (232-299)||(30600398-30600467)
chr8 (237-314)||(33714270-33714348)
chr8 (240-299)||(35869797-35869858)
chr8 (230-297)||(42597351-42597420)
chr8 (229-299)||(2605968-2606040)
chr8 (271-316)||(8062322-8062367)
chr8 (233-274)||(8066917-8066958)
chr8 (230-312)||(28784831-28784915)
chr8 (233-315)||(34551073-34551157)
chr8 (230-295)||(1470909-1470976)
chr8 (230-298)||(1664333-1664401)
chr8 (245-314)||(6509337-6509408)
chr8 (230-270)||(6918259-6918299)
chr8 (230-270)||(26215446-26215486)
chr8 (275-315)||(26473785-26473825)
chr8 (229-265)||(39392746-39392782)
chr8 (231-271)||(40728497-40728537)
[»] scaffold0020 (1 HSPs)
scaffold0020 (237-312)||(160009-160085)
[»] scaffold0590 (1 HSPs)
scaffold0590 (230-268)||(1156-1194)
[»] scaffold0275 (1 HSPs)
scaffold0275 (230-268)||(2781-2819)
[»] scaffold0022 (1 HSPs)
scaffold0022 (230-299)||(143111-143181)
[»] scaffold0199 (1 HSPs)
scaffold0199 (230-298)||(6774-6842)
[»] scaffold0024 (1 HSPs)
scaffold0024 (230-316)||(23861-23951)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 360
Target Start/End: Original strand, 49085703 - 49086071
Alignment:
Q  9 gataattctgtaagttactattaatacc-attgtatttatttaatgctgtttggcg-cttgctgtctgtggttaacaagttctttgttgcttaccatttt 106  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49085703 gataattctgtaagttactattaatacctattttatttatttaatgctgtttggcgtcttgctgtctgtggttaacaagttctttgttgcttaccatttt 49085802  T
Q  107 tgtcttcgcatataatgaagagaatttggcattttgcttctgatttcaatacaggcaaatacaatatagtccttgcttgga-------------taagta 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||    
T  49085803 tgtcttcgcatataatgaagagaatttggcattttgcttctgatttcaatacaggcaaatacaatatagtccttgcttggataaatagcttaattaagta 49085902  T
Q  194 ttgtttatcacatatgtgcttatgtatatactattactatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttc 291  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  49085903 ttgtttatcatatatgtgcttatgtatatactattactatttatataacaaaagataaaataatgtcaaactattttcatacaagttataagttgttttc 49086002  T
Q  292 ataagctaccttagagagcttatgggcatgccataagttgtttatataagctctctaaaatagtctgac 360  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  49086003 ataagctaccttagagagcttatgggtatgccataagttgtttatataagctctgtaaaacagtctgac 49086071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 27623586 - 27623694
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttat---aagttgttttcataagctaccttagagagcttatgggcatgccat 325  Q
    ||||| |||||||||||||||||||| |||||||||||||  |||||| |||   |||||||||||||||| || | | ||||||||||| ||||| |||    
T  27623586 tatttgtataacaaaagataaaataaagtcaaactattttaatataagctataagaagttgttttcataagttatcctggagagcttatgagcatgtcat 27623685  T
Q  326 aagttgttt 334  Q
    | |||||||    
T  27623686 aggttgttt 27623694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 30207683 - 30207603
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||||||| |||||||||  ||||||| ||||  |||||| |||||||||||||||||||||||||||||||| ||||||    
T  30207683 tataacaaaaaataaaataaa-tcaaactgttttcatataagctataagttgttttcataagctaccttagagagattatgg 30207603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 4071831 - 4071917
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||||| |||||||||||||||||||| |||||| ||||||  |||||| ||||||||||| | ||||||||   ||||||||||||||    
T  4071831 actatttctataacaaaagataaaataaagtcaaattattttcatataagctataagttgttatgataagcta---tagagagcttatgg 4071917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 17884018 - 17884105
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactattttt--ataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| |||||||||||||||||||| || ||| | |||||  ||||||||| ||||||||||||||||||  || |||||||||||    
T  17884018 ctatttctataacaaaagataaaataaagttaaattgtttttgtataagttatcagttgttttcataagctatattggagagcttatg 17884105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 49219090 - 49219177
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||| |||||||||| ||||||||| |||||| ||||||  |||||| |||||||||||||||||| ||| |||| |||| ||||||    
T  49219090 tatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaactatcttaaagagattatgg 49219177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 7730630 - 7730703
Alignment:
Q  284 ttgttttcataagctaccttagagagcttatgggcatgccataagttgtttatataagctctctaaaatagtct 357  Q
    |||||||||||||||| | | |||||||||||| |||| ||||||||||||   ||||||||| ||||||||||    
T  7730630 ttgttttcataagctatcctggagagcttatggacatgtcataagttgtttccttaagctctccaaaatagtct 7730703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 10192233 - 10192305
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||| |||||||||||||| ||||| |||||| | ||||  |||||||||||||||||||||| ||||||    
T  10192233 actatttttataacaaaagatagaataaagtcaaattgttttcatataagttataagttgttttcaaaagcta 10192305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 52735072 - 52735160
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||| | |||||||||||||||||| |||||| || |||  ||||||||||| ||||||||| ||||||| |||  |||||||||||    
T  52735072 ctatttctgtaacaaaagataaaataaagtcaaattactttcatataagttatatgttgttttcgtaagctatcttgaagagcttatgg 52735160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 2996531 - 2996610
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| |||||||||||  |||||| | ||||||||  ||||||||||||||||||||||||| ||| |||||| ||||    
T  2996531 ataacataagataaaatacagtcaaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatg 2996610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 328
Target Start/End: Original strand, 2733283 - 2733371
Alignment:
Q  243 aaaagataaaataatgtcaaactattttt---ataagttataagttgttttcataagctaccttagagagcttatgggcatgccataag 328  Q
    |||||||||||||| || ||||||| |||   ||||||||| ||||||||||||||| || | |||||||||||||  |||| ||||||    
T  2733283 aaaagataaaataaagttaaactatattttgcataagttattagttgttttcataagatatcatagagagcttatgaacatgtcataag 2733371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 11158431 - 11158393
Alignment:
Q  274 aagttataagttgttttcataagctaccttagagagctt 312  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  11158431 aagttataagttgttttcataagctatcttagagagctt 11158393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 24929442 - 24929531
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||||| |||||||||||||||||||| ||| |||| ||||  || ||| |||||||||||||||||| ||    ||||||||||||||    
T  24929442 actatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataaactctactagagagcttatgg 24929531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 28582018 - 28581945
Alignment:
Q  242 caaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagctta 313  Q
    ||||||||||||||| |||||||||||||   ||| ||||| ||||||||||| |||||| | |||||||||||    
T  28582018 caaaagataaaataaagtcaaactattttcagatatgttatgagttgttttcaaaagctatcatagagagctta 28581945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 55870459 - 55870390
Alignment:
Q  232 atttatataacaaaagataaaataatgtcaaactattttta--taagttataagttgttttcataagcta 299  Q
    |||| ||||||||||||| |||||| |||||||| |||| |  |||| ||||||||||||||||||||||    
T  55870459 atttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcataagcta 55870390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 16494886 - 16494841
Alignment:
Q  267 tttttataagttataagttgttttcataagctaccttagagagctt 312  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||||    
T  16494886 tttttataagctataagttgttttcataagctatcttggagagctt 16494841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 20936123 - 20936082
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt 270  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  20936123 actatttctataacaaaagataaaataaagtcaaactatttt 20936082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 24160608 - 24160545
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttttat--aagttataagttgttttcataagct 298  Q
    ||||||||||||||| ||||  |||||||||||| ||  ||| |||||||||||||||||||||    
T  24160608 tataacaaaagataatataaattcaaactattttcatgtaagctataagttgttttcataagct 24160545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 52926179 - 52926247
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaact-atttttataagttataagttgttttcataagct 298  Q
    ||||| |||||||||||||||||||  ||||||||  ||||||  |||||||||||||| |||||||||    
T  52926179 tatttctataacaaaagataaaatatagtcaaactgttttttaatagttataagttgttctcataagct 52926247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 23815321 - 23815360
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt 270  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  23815321 tatttctataacaaaagataaaataatgtcaaactgtttt 23815360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 39063762 - 39063680
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| ||| ||||||||||||| ||||||||||| |||| || |||||||   |||||| |||||||| | | |||||||||||    
T  39063762 ctatttctattacaaaagataaaacaatgtcaaactgttttcattagttata---tgtttttataagctatcctggagagcttatg 39063680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 24443998 - 24444059
Alignment:
Q  240 aacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||| |||||||||  |||||| |||||  |||||| ||||||||||||||||||||||    
T  24443998 aacaaaatataaaataaattcaaacaattttcatataagctataagttgttttcataagcta 24444059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 28623240 - 28623274
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaact 265  Q
    ||||||||||||||||||||||||||||| |||||    
T  28623240 tatttatataacaaaagataaaataatgttaaact 28623274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 46415904 - 46415827
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctaccttagagagctta 313  Q
    ||||||||||||||||||   ||||||| |||| |||  ||||||||||| ||||||||||||| | | |||||||||    
T  46415904 ataacaaaagataaaataggatcaaactgttttcatacaagttataagttcttttcataagctatcctcgagagctta 46415827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 54325158 - 54325069
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||||| ||| |||||||||||||||| |||||||| ||||  |||||| |||||| | |||||| |||||| | | ||||| ||||||    
T  54325158 actatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctattttcaaaagctatcatggagagtttatgg 54325069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 3175908 - 3175972
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactattttta--taagttataagttgttttcataagcta 299  Q
    |||| ||||||||||||||| |||||| | |||| |  ||||||||||| |||||||||||||||    
T  3175908 tatagcaaaagataaaataaagtcaaattgttttcaagtaagttataagctgttttcataagcta 3175972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 11264294 - 11264339
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||| |||||||||||||||||||||| | | ||||||||||||||    
T  11264294 tatatgttataagttgttttcataagccatcctagagagcttatgg 11264339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 29374007 - 29373939
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaa--ctatttttataagttataagttgttttcataag 296  Q
    |||||| ||||||| |||||||||||||||||||   ||||  |||||| ||||| |||||||||||||    
T  29374007 ctatttctataacagaagataaaataatgtcaaaatgtattcatataagctataatttgttttcataag 29373939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 41701561 - 41701528
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaa 263  Q
    ||||||||||||||||||||||||||| ||||||    
T  41701561 ctatttatataacaaaagataaaataaagtcaaa 41701528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 42866061 - 42866106
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||| |||||||||||||||||||||| | | ||||||||||||    
T  42866061 tataagctataagttgttttcataagctatccttgagagcttatgg 42866106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 46797011 - 46797044
Alignment:
Q  271 tataagttataagttgttttcataagctacctta 304  Q
    ||||||||||||||||||||||||||||| ||||    
T  46797011 tataagttataagttgttttcataagctagctta 46797044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 2980566 - 2980515
Alignment:
Q  250 aaaataatgtcaaactatttttata--agttataagttgttttcataagcta 299  Q
    ||||||| ||||||||||||| |||  |||||||||||||| ||||||||||    
T  2980566 aaaataaagtcaaactattttcatacaagttataagttgttctcataagcta 2980515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 11698937 - 11698984
Alignment:
Q  258 gtcaaactatttt--tataagttataagttgttttcataagctacctt 303  Q
    |||||||||||||  |||| |||| |||||||||||||||||||||||    
T  11698937 gtcaaactattttcatatatgttagaagttgttttcataagctacctt 11698984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 18628654 - 18628575
Alignment:
Q  239 taacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||||||  ||||||  |||||||| ||||||||  ||||||||  |||||||||||| || ||| ||||||||||||    
T  18628654 taacaaaaggaaaaatatagtcaaactgtttttatataagttataaactgttttcataagttatcttggagagcttatgg 18628575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 29778788 - 29778832
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| | ||||||||||||||||||||||||  ||||||||||    
T  29778788 tataagctgtaagttgttttcataagctaccttgaagagcttatg 29778832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 30581784 - 30581709
Alignment:
Q  243 aaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||||||||| | |||||||||||||  |||||| |||||| |||||| ||||| || ||| ||||| ||||||    
T  30581784 aaaagataaaatgaagtcaaactattttcgtataagctataagctgttttaataagttatcttggagagtttatgg 30581709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 32724069 - 32724109
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt 270  Q
    |||||| ||| |||||||||||||||| |||||||||||||    
T  32724069 ctatttctattacaaaagataaaataaagtcaaactatttt 32724109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 42321999 - 42321936
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttc 291  Q
    |||||| ||||||||| |||||||||| |||||| | ||||  ||||| |||||||||||||||    
T  42321999 ctatttttataacaaatgataaaataaagtcaaattgttttcatataaattataagttgttttc 42321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 46013410 - 46013363
Alignment:
Q  240 aacaaaagataaaataatgtcaaactatttt--tataagttataagtt 285  Q
    ||||||||||||||||| |||||||| ||||  |||||||||||||||    
T  46013410 aacaaaagataaaataaagtcaaactgtttttatataagttataagtt 46013363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 47970268 - 47970308
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt 270  Q
    |||||| |||||||||||||||||| | |||||||||||||    
T  47970268 ctatttctataacaaaagataaaatgaagtcaaactatttt 47970308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 49893274 - 49893353
Alignment:
Q  239 taacaaaagataaaataatgtcaaac--tatttttataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||||||||||| ||| ||| |||  | ||| ||||||||||||| ||||||| ||||||| | | ||||||||||||    
T  49893274 taacaaaagataaactaaagtcgaaccttgtttgtataagttataagctgttttcgtaagctatccttgagagcttatgg 49893353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 50745950 - 50745994
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttata 274  Q
    |||||| ||||||||||||||||||||  ||||||| ||||||||    
T  50745950 ctatttttataacaaaagataaaataaaatcaaactgtttttata 50745994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 51630061 - 51630132
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||||||| ||||||||||||||| || ||| | ||||  |||||| |||||| | |||||||||||||    
T  51630061 ctatttatatagcaaaagataaaataaagttaaattgttttgatataagctataagctattttcataagcta 51630132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 56480341 - 56480385
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    ||||||||||||| ||||||||||| ||| ||| |||||||||||    
T  56480341 tataagttataagctgttttcataaactatcttggagagcttatg 56480385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 15075207 - 15075117
Alignment:
Q  229 actatttatataacaaaagataaaataatgtc-aaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||||| ||||||||||||||||||    || ||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  15075207 actatttctataacaaaagataaaatttaatcaaaactatttttatataagttataagttattttcataaactaccttagagagcttatgg 15075117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 1417213 - 1417285
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||||||||||||||||||||||||| |||||| | ||||  ||||||  |||||||||||||||||||||    
T  1417213 actatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataagcta 1417285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 248 - 346
Target Start/End: Complemental strand, 28340498 - 28340398
Alignment:
Q  248 ataaaataatgtcaaactatttttat--aagttataagttgttttcataagctaccttagagagcttatgggcatgccataagttgtttatataagctct 345  Q
    ||||||||| |||||||| |||| ||  ||||||||||||||||||| ||||||   | |||||||||||| |||| ||||||||||||  |||||||||    
T  28340498 ataaaataaagtcaaactgttttcatgtaagttataagttgttttcagaagctatgctggagagcttatggacatgtcataagttgttttcataagctct 28340399  T
Q  346 c 346  Q
    |    
T  28340398 c 28340398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 30456570 - 30456483
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| || ||||||||||||||||| |||||| | ||||  |||||||||||||| |||||||||| ||| ||| |||||||||||    
T  30456570 ctatttctaaaacaaaagataaaataaagtcaaattgttttcatataagttataagtggttttcataaactatcttggagagcttatg 30456483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 5006622 - 5006556
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctacc 301  Q
    |||||||||||||||||||| |||||||| ||||  |||||| ||||| ||||||||||||||||||    
T  5006622 tataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataagctacc 5006556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 47004037 - 47004110
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctacc 301  Q
    |||||| |||||||| ||||||||||| |||||||||||||||||  |  |||||| |||||||||||||||||    
T  47004037 ctatttctataacaatagataaaataaagtcaaactatttttatatgaactataagctgttttcataagctacc 47004110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 5373175 - 5373239
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttca 292  Q
    |||||| |||||||||||||||||||| ||| ||  |||||  ||||||||||||||||||||||    
T  5373175 ctatttctataacaaaagataaaataaagtccaaacatttttatataagttataagttgttttca 5373239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 357
Target Start/End: Original strand, 36532308 - 36532431
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt---tataagttataagttgttttcataagctaccttagagagcttatgggcatgccataagttgtt 333  Q
    ||||||||||||||||| || |||||| ||||||   || |||||| ||| |||||| |||||  | |||||||||||||||  ||||  |||||||| |    
T  36532308 tataacaaaagataaaacaaagtcaaattattttcaatacaagttagaagctgtttttataagtcatcttagagagcttatgaacatgttataagttggt 36532407  T
Q  334 tatataagctctctaaaatagtct 357  Q
    | |||||| ||||| ||| |||||    
T  36532408 tctataagttctctcaaacagtct 36532431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 9527203 - 9527140
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagct 298  Q
    |||||||||||||| ||||| |||||||| ||||  |||||  |||||||||||||||||||||    
T  9527203 tataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttcataagct 9527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 3610860 - 3610774
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttat 314  Q
    |||||| || ||||||||||||||| | | |||||| ||||  |||||| |||||||||||||| ||| ||| | ||||||||||||    
T  3610860 ctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagctataagttgttttcgtaaactatcctagagagcttat 3610774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 18749928 - 18749866
Alignment:
Q  232 atttatataacaaaagataaaataatgtcaaactatttttataagttataagttgttttcataagcta 299  Q
    |||| |||||||||||||||| ||| |||||||||||||||     |||||| |||||||||||||||    
T  18749928 atttctataacaaaagataaagtaaagtcaaactattttta-----tataagctgttttcataagcta 18749866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 31338471 - 31338525
Alignment:
Q  243 aaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataa 295  Q
    |||||||||||||| |||||||| ||||  ||||||||||||||||||| |||||    
T  31338471 aaaagataaaataaagtcaaactgtttttatataagttataagttgtttccataa 31338525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 32210262 - 32210305
Alignment:
Q  273 taagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||||||||||||||| |||||||| ||| ||||||||||||    
T  32210262 taagttataagttgtttttataagctatctttgagagcttatgg 32210305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 290
Target Start/End: Original strand, 1914396 - 1914426
Alignment:
Q  260 caaactatttttataagttataagttgtttt 290  Q
    |||||||||||||||||||||||||||||||    
T  1914396 caaactatttttataagttataagttgtttt 1914426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 27492744 - 27492825
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagaga 308  Q
    ||||||| ||||||||||| | ||||||  ||||||| ||||  ||||||| ||||| ||||||||||||||| ||| ||||    
T  27492744 actatttctataacaaaagttcaaataaaatcaaacttttttcatataagtaataagatgttttcataagctatctttgaga 27492825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 44179028 - 44178958
Alignment:
Q  245 aagataaaataatgtcaaactatttttataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||||||||| |||||||  |||| ||||| ||||| || ||||||||| ||| |||||||| ||||||    
T  44179028 aagataaaataaagtcaaaccgttttcataagctataatttattttcataatctatcttagagaacttatg 44178958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 396329 - 396285
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttataa 275  Q
    ||||||||||||||||||||||||||| |||||||| |||| ||||    
T  396329 ctatttatataacaaaagataaaataa-gtcaaactgttttcataa 396285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 7243593 - 7243638
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttttata 274  Q
    ||||||| |||||||||||||||||||| |||||||  ||||||||    
T  7243593 actatttttataacaaaagataaaataacgtcaaacagtttttata 7243638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 12110310 - 12110381
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||| ||| ||| |||||||||||| |||||| | ||||  |||||| |||||| |||||||||||||||    
T  12110310 ctatttctattacacaagataaaataaagtcaaattgttttggtataagctataagctgttttcataagcta 12110381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 17989136 - 17989073
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagct 298  Q
    |||||||||| ||||||||| |||||||| ||||  |||||  ||||| |||||||||||||||    
T  17989136 tataacaaaatataaaataaagtcaaactgttttcatataaactataatttgttttcataagct 17989073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 18350784 - 18350740
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    ||||||||||||| ||||||||||||||| | | |||||||||||    
T  18350784 tataagttataagctgttttcataagctatcatggagagcttatg 18350740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 28613654 - 28613583
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactattttt--ataagttataagttgttttcataagcta 299  Q
    |||||| ||||||||||||||||| || || ||| | |||||  ||||||||||||||||| || |||||||    
T  28613654 ctatttttataacaaaagataaaacaaagttaaattgtttttgtataagttataagttgttgtcgtaagcta 28613583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 31002722 - 31002781
Alignment:
Q  241 acaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagct 298  Q
    |||||||||||||||| |||||| ||||||  |||||| |||||| |||||| |||||||    
T  31002722 acaaaagataaaataaagtcaaaatattttcatataagctataagctgttttgataagct 31002781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 31341144 - 31341188
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttata 274  Q
    |||||| |||||||||||||||||||| ||||||||  |||||||    
T  31341144 ctatttgtataacaaaagataaaataaagtcaaactggttttata 31341188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 40689106 - 40689035
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||| |||| ||||||||||||||| || ||| ||||||  |||||| |||||| ||| |||||||||||    
T  40689106 ctatttctatagcaaaagataaaataaagttaaattattttcatataagctataagctgtgttcataagcta 40689035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 45777287 - 45777228
Alignment:
Q  234 ttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttc 291  Q
    ||||||||||||||||||||| | |||||||| ||||  |||||  ||||||||||||||    
T  45777287 ttatataacaaaagataaaattaagtcaaactgttttcatataaactataagttgttttc 45777228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 36863732 - 36863658
Alignment:
Q  243 aaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||||||||||| ||||||| |||||||||  |||||||| |||||||||||||||| ||| |||||||||||    
T  36863732 aaaagataaaataaagtcaaacaatttttatataagttataaattgttttcataagctatcttggagagcttatg 36863658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 17952821 - 17952750
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||| |||||||||||||||||||| |||||||||||||  |||||| || ||| |||||||||||||||    
T  17952821 ctatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcataagcta 17952750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 28933774 - 28933857
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttat--aagttataagttgttttcataagctaccttagagagct 311  Q
    ||||||||||||||||||||||||| |  ||||| |||||| ||  ||||||||| |||||||||||||||| | |||||||||    
T  28933774 ctatttatataacaaaagataaaatcaaatcaaattattttcatttaagttataaattgttttcataagctatcctagagagct 28933857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 28803618 - 28803520
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgggcatgccataagttgttt 334  Q
    ||||||||||||||||||| ||||||||  |||  |||||| || ||||||||||| ||| ||| | | |||||||||||| |||| ||||||||||||    
T  28803618 ataacaaaagataaaataaagtcaaactgatttcatataagctacaagttgttttcttaaactatcctggagagcttatggacatgtcataagttgttt 28803520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 5998822 - 5998755
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttataagttataagttgttttcataagcta 299  Q
    |||||| |||||||||||||||||||| || |||||  ||| ||||||||||||||||||||| ||||||    
T  5998822 ctatttttataacaaaagataaaataaagttaaact--tttcataagttataagttgttttcacaagcta 5998755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 6988072 - 6988136
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactattt--ttataagttataagttgttttcataagcta 299  Q
    |||||||||||||||||||| |||||| |||||  |||  |||||||||||||||||||||||||    
T  6988072 tataacaaaagataaaataaagtcaaattattttcttactagttataagttgttttcataagcta 6988136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 10143123 - 10143227
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgggcatgccataag 328  Q
    ||||| |||||||||||||||||| | |||||||| ||||  |||||| |||||||| ||||||||||||| | | ||||| ||||||  ||| |||||     
T  10143123 tatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataagctatcatggagagtttatggatatgtcataaa 10143222  T
Q  329 ttgtt 333  Q
    |||||    
T  10143223 ttgtt 10143227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 43299523 - 43299451
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagt-tataagttgttttcataagcta 299  Q
    |||||||||||||| |||||||||||| |||||||| ||||  ||||| | ||||||||||||||||||||||    
T  43299523 ctatttatataacagaagataaaataaagtcaaactgtttttgtataaatctataagttgttttcataagcta 43299451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 14666506 - 14666569
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||||||||||||||| ||||||||  |||  |||||||||||||||||||||| ||||||    
T  14666506 ataacaaaagataaaataaagtcaaactgatttcatataagttataagttgttttcacaagcta 14666569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 9878802 - 9878737
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactattttt--ataagttataagttgttttcat 293  Q
    |||||| ||||||||||||||||||||  |||||||||||||  ||| | ||||||||||||||||    
T  9878802 ctatttctataacaaaagataaaataaactcaaactatttttacatatgctataagttgttttcat 9878737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 11513858 - 11513919
Alignment:
Q  240 aacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||||||||||||| |||||| | ||||  |||||| ||||||||||||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataagcta 11513919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 35485881 - 35485938
Alignment:
Q  244 aaagataaaataatgtcaaactattt--ttataagttataagttgttttcataagcta 299  Q
    ||||||||||||| ||||||||||||  ||||||| ||||||||||||| ||||||||    
T  35485881 aaagataaaataaagtcaaactatttcattataagctataagttgtttttataagcta 35485938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 40145421 - 40145482
Alignment:
Q  239 taacaaaagataaaataatgtcaaactatttttat--aagttataagttgttttcataagct 298  Q
    |||||||||||||||||| |||||  | |||||||  |||||||||||||||||||||||||    
T  40145421 taacaaaagataaaataaagtcaagttgtttttatgtaagttataagttgttttcataagct 40145482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 5133722 - 5133810
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||| |||||||||||||||||||| |  ||||| ||||  |||||| |||||| |||||||| ||| || || |||||||||||||    
T  5133722 ctatttctataacaaaagataaaataaagataaactgtttttatataagatataagctgttttcaaaagttatctaagagagcttatgg 5133810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 31740079 - 31740019
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgtt 288  Q
    |||||| |||||| ||||||||||||| |||||||||||||  |||||| |||||||||||    
T  31740079 ctatttctataactaaagataaaataaagtcaaactattttcatataagctataagttgtt 31740019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 37053543 - 37053615
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||| ||||||| || ||||||||| |||||||| ||||  ||||||||||||||| ||||||| |||||    
T  37053543 actatttctataacagaaaataaaataaagtcaaactgttttcatataagttataagtttttttcattagcta 37053615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 43279647 - 43279578
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttataagttataagttgttttcataagcta 299  Q
    |||||| |||| |||||||||||||||||| ||| | ||||| || | ||||||||||||| ||||||||    
T  43279647 ctatttttatatcaaaagataaaataatgtgaaattgtttttgtatgctataagttgtttttataagcta 43279578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 32694162 - 32694233
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||| |||| |||||||||||||||  ||| ||||||||  ||||| ||||||||||||| |||||||||    
T  32694162 ctatttctatatcaaaagataaaataaaatcagactatttttatataatttataagttgtttgcataagcta 32694233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 33942112 - 33942183
Alignment:
Q  242 caaaagataaaataatgtcaaactatttttat--aagttataagttgttttcataagctaccttagagagct 311  Q
    ||||||||||||||| |||||||| |||| ||  ||| |||||||||||||||||||| | | |||||||||    
T  33942112 caaaagataaaataaagtcaaactgttttcatgtaagctataagttgttttcataagccatcatagagagct 33942183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 35099713 - 35099631
Alignment:
Q  237 tataacaaaagataaaataatgtcaaa-ctatttttat--aagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||||||||||||||||||  ||||| ||||||| ||  |||||||||| || |||||||||||| | | ||||||||||||    
T  35099713 tataacaaaagataaaataaaatcaaaactattttcattaaagttataagctgctttcataagctatccttgagagcttatgg 35099631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 37292462 - 37292396
Alignment:
Q  235 tatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||| ||||||||||||||||| || ||||||||||  |||||| ||| |||||||||| |||||||    
T  37292462 tatacaacaaaagataaaataaagtaaaactattttcatataagctattagttgttttcttaagcta 37292396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 1625893 - 1625935
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagctta 313  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||    
T  1625893 tataagttataagttgttttcataagctatcttggagaactta 1625935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 5043666 - 5043609
Alignment:
Q  244 aaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||||||||| |||||||| ||||  |||||| || |||||||||||||||||||    
T  5043666 aaagataaaataaagtcaaactgttttcatataagctagaagttgttttcataagcta 5043609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 32098428 - 32098378
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttataagttat 280  Q
    |||||| |||||||||||||||||||| |||||| | |||| |||||||||    
T  32098428 ctatttctataacaaaagataaaataaagtcaaagtgttttcataagttat 32098378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 313
Target Start/End: Complemental strand, 34055021 - 34054936
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactattt--ttataagttataagttgttttcataagctaccttagagagctta 313  Q
    |||||| |||||||||||||||||||| | |||||| |||   |||| | |||||| ||||||||||||||| | || ||||||||    
T  34055021 ctatttctataacaaaagataaaataaaggcaaactgtttacatatatgatataaggtgttttcataagctatcctatagagctta 34054936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 6541807 - 6541750
Alignment:
Q  243 aaaagataaaataatgtcaaact-atttttataagttataagttgttttcataagcta 299  Q
    ||||||||||||||||| ||| | || |||||| ||||||||||||||| ||||||||    
T  6541807 aaaagataaaataatgttaaattgatgtttatatgttataagttgttttaataagcta 6541750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 6993833 - 6993757
Alignment:
Q  241 acaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||||||||||||| |||||| ||| ||  |||||| |||| |||||||||||||||||   | |||||||||||    
T  6993833 acaaaagataaaataaggtcaaattatattcatataagctataggttgttttcataagctatgcttgagagcttatg 6993757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 39621904 - 39621969
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttttataagttataagttgttttcataag 296  Q
    ||||| ||||||| || ||||||||| |||||||| ||| |||||  |||||| ||||||||||||    
T  39621904 tatttctataacacaaaataaaataaagtcaaactttttgtataatctataagctgttttcataag 39621969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 656897 - 656810
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| |||||||||||||||||||   ||||| | ||||  |||||| | ||||||| |||||||||||| |||  ||||||||||    
T  656897 ctatttctataacaaaagataaaatataatcaaattgttttcgtataagctgtaagttgatttcataagctatcttgcagagcttatg 656810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 3102643 - 3102687
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttata 274  Q
    |||||| |||| ||||| ||||||||| |||||||||||||||||    
T  3102643 ctatttttatagcaaaatataaaataaagtcaaactatttttata 3102687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 3673758 - 3673841
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagctt 312  Q
    ||||| |||||||||| ||||||||| || ||| | ||||  ||||||||||||||| ||||||| ||||| |||  |||||||    
T  3673758 tatttctataacaaaatataaaataaagttaaattgttttcatataagttataagtttttttcattagctatcttgaagagctt 3673841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 4026767 - 4026834
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactattttt--ataagttataagttgttttcataa 295  Q
    |||||| |||| ||||||||||||||| || ||| |||||||  |||| ||||||| |||||||||||    
T  4026767 ctatttttatagcaaaagataaaataaagttaaattatttttgcataaattataagctgttttcataa 4026834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 5867267 - 5867231
Alignment:
Q  272 ataagttataagttgttttcataagctaccttagaga 308  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  5867267 ataagttttaagttgttttcataagctatcttagaga 5867231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 7103588 - 7103521
Alignment:
Q  245 aagataaaataatgtcaaactatttt--tataagttataagttgtttt-cataagctaccttagagag 309  Q
    |||||||||||| |||||||| ||||  |||||| |||||| |||||| ||||||||| |||||||||    
T  7103588 aagataaaataaagtcaaactgttttaatataagctataagctgtttttcataagctatcttagagag 7103521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 9477945 - 9477973
Alignment:
Q  271 tataagttataagttgttttcataagcta 299  Q
    |||||||||||||||||||||||||||||    
T  9477945 tataagttataagttgttttcataagcta 9477973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 10563639 - 10563607
Alignment:
Q  267 tttttataagttataagttgttttcataagcta 299  Q
    ||||| |||||||||||||||||||||||||||    
T  10563639 tttttgtaagttataagttgttttcataagcta 10563607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 18962158 - 18962087
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||| |||||||||||||||||||| || ||||| ||||  |||||| |||||  | |||||||||||||    
T  18962158 ctatttttataacaaaagataaaataaagttaaactgttttcatataagctataaactattttcataagcta 18962087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 33192142 - 33192197
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataa 282  Q
    ||||||| ||||||| |||||||||||| |||||||| ||||  ||||||||||||    
T  33192142 actatttctataacataagataaaataaagtcaaactgttttcatataagttataa 33192197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 33941902 - 33941946
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||||||||| |||||||||||||||| ||| ||||| |||||    
T  33941902 tataagttataacttgttttcataagctatcttggagagtttatg 33941946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 43199194 - 43199226
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaa 263  Q
    |||||||||||||||||||||||||| ||||||    
T  43199194 tatttatataacaaaagataaaataaagtcaaa 43199226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 43985080 - 43985036
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    ||||| ||||||||||||||||||||||| |||  ||||||||||    
T  43985080 tataaattataagttgttttcataagctatcttgaagagcttatg 43985036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 38047966 - 38047857
Alignment:
Q  239 taacaaaagataaaataatgtcaaactatttttataagt--tataagttgttttcataagctaccttagagagcttatgggcatgccataagttgtttat 336  Q
    |||||||||||||||||| |||||| |||||| |||  |  |||| | ||||||||||||||| | | |||||||||||| |||| ||||||||||||      
T  38047966 taacaaaagataaaataaagtcaaattattttcatatatactatatgctgttttcataagctatcctggagagcttatggacatgtcataagttgtttcc 38047867  T
Q  337 ataagctctc 346  Q
    ||||||||||    
T  38047866 ataagctctc 38047857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 39823240 - 39823171
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagct 298  Q
    |||||||||||||||||||||||||| ||||||||| |||  |||||| || ||||||||||||||||||    
T  39823240 tatttatataacaaaagataaaataaagtcaaactactttcatataagctacaagttgttttcataagct 39823171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 40097158 - 40097227
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttttataagttataagttgttttcataagct 298  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| || |||| ||||||| |||||||||||    
T  40097158 actatttctatcacaaaagataaaataatgtcaaattattttcatgagttgtaagttggtttcataagct 40097227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 315
Target Start/End: Original strand, 6593252 - 6593336
Alignment:
Q  232 atttatataacaaaagataaaataatgtcaaactatttt-tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||| |||||||||||||||||||| || ||| |||| | |||| | |||||| |||||| ||||||||||||||||||||||||    
T  6593252 atttctataacaaaagataaaataaagttaaattattctgtataggctataagctgttttgataagctaccttagagagcttatg 6593336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 14295456 - 14295540
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagctt 312  Q
    |||||| |||||||||||||||||||| |||||||| ||||  |||||| |||||| ||||||| ||||||| | | ||||||||    
T  14295456 ctatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaagctatcctggagagctt 14295540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 28586887 - 28586800
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttat 314  Q
    ||||||| |||||||||||||||||||| |||||||| ||||  ||||| ||||||| |||||| |  ||||| | ||||||||||||    
T  28586887 actatttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgttttgacgagctatcctagagagcttat 28586800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 29659309 - 29659387
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctaccttagagagcttat 314  Q
    |||||||||| ||||||||| |||||||||||  ||||  |||||||||||||||||||||| || ||||||||| ||||    
T  29659309 tataacaaaatataaaataa-gtcaaactattcctatacaagttataagttgttttcataagttatcttagagagtttat 29659387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 18704154 - 18704085
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagcta 299  Q
    ||||| |||||||||||||||| ||| ||||| |||||||||||  || ||||||||||||||||||||||    
T  18704154 tatttctataacaaaagataaa-taaagtcaagctatttttatataagctataagttgttttcataagcta 18704085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 34690824 - 34690911
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttata-agttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||| |||||||||||||||||||| |||| | || ||| ||| || ||||||||||| |||||||| | ||| ||||||||||||    
T  34690824 ctatttctataacaaaagataaaataaagtcacaatactttcatatagctataagttgttctcataagccatcttggagagcttatgg 34690911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 35960363 - 35960434
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactattt-ttataagttataagttgttttcataagcta 299  Q
    ||||||| ||||| |||||||||||||| ||||||||||||  |||||  ||||||||| ||||||||||||    
T  35960363 actatttctataataaaagataaaataaagtcaaactatttcatataaactataagttgatttcataagcta 35960434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 41277456 - 41277399
Alignment:
Q  244 aaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||||||||| |||||||| ||||  ||||||||| |||||||||||||||||||    
T  41277456 aaagataaaataaagtcaaactgttttcatataagttaaaagttgttttcataagcta 41277399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 314
Target Start/End: Complemental strand, 12595886 - 12595774
Alignment:
Q  204 catatgtgcttatgtatatactattactatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctacc 301  Q
    |||| ||| ||||||||| |||| || | ||| |||||||||||||||||||| || ||| | ||||  |||||  ||| || || ||||||||||||||    
T  12595886 cataagtgtttatgtataaactaatattgtttctataacaaaagataaaataaagttaaattgttttcatataaactatgagctggtttcataagctacc 12595787  T
Q  302 ttagagagcttat 314  Q
    ||| |||||||||    
T  12595786 ttaaagagcttat 12595774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 15003626 - 15003546
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||||||||||||||||  ||||||| | ||  |||||| ||||||| |||||||||||||| |  |||||||||||||    
T  15003626 ataacaaaagataaaataaaatcaaactctcttcatataagctataagtggttttcataagctatccaagagagcttatgg 15003546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 35135781 - 35135725
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagtt 285  Q
    ||||| |||||||||||||||||||| |||||||||||||  |||||| ||||||||    
T  35135781 tatttctataacaaaagataaaataaagtcaaactattttcatataagctataagtt 35135725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 37063195 - 37063154
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt 270  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  37063195 actatttctataacaaaagataaaataaagtcaaactatttt 37063154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 39750102 - 39750157
Alignment:
Q  239 taacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttca 292  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||  ||||||||    
T  39750102 taacaaaagataaaataaagtcaaactattttcatataagttataacctgttttca 39750157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 26516359 - 26516421
Alignment:
Q  239 taacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||| ||||||||||| ||||||||| |||  ||||||||||||  |||||||||||||||    
T  26516359 taacaatagataaaataaagtcaaactactttcatataagttataaactgttttcataagcta 26516421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 7096247 - 7096201
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttataag 276  Q
    |||||| |||||||||||||||||||| ||||||| ||||| |||||    
T  7096247 ctatttctataacaaaagataaaataaagtcaaaccattttcataag 7096201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 18543317 - 18543229
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactattttt---ataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| ||| |||||| || |||||| ||||||||  ||||   ||||| |||||||||||||||||||||| | | |||||||||||    
T  18543317 ctatttgtatcacaaaatattaaataaagtcaaacttgtttttatataagatataagttgttttcataagctatcctggagagcttatg 18543229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 9634729 - 9634793
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||||||||| || ||| ||| || ||||||  |||| ||||||||||||||||||||||||    
T  9634729 tataacaaaagatgaactaaagtcgaagtattttcatatatgttataagttgttttcataagcta 9634793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 315
Target Start/End: Original strand, 12425520 - 12425608
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    ||||||||||||  |||||||||||||| || ||| | ||||  |||||| |||||| |||||||| |||||| ||| |||| ||||||    
T  12425520 actatttatatagtaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatg 12425608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 16889693 - 16889773
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttttat--aagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||||||||||||| | | |||||||| |||||||  ||| |||||| |||||||||||||||   ||||||| ||||||    
T  16889693 ataacaaaagataaacttaagtcaaactgtttttatagaagctataagctgttttcataagctatgctagagagtttatgg 16889773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 32969230 - 32969193
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttttata 274  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  32969230 tataacaaaagataaaataaagtcaaattatttttata 32969193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 4855648 - 4855715
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataa 295  Q
    |||||| |||||||||| ||||||||| || ||| | || |  |||||||||||||||||||||||||    
T  4855648 ctatttttataacaaaaaataaaataaagttaaattgttatcatataagttataagttgttttcataa 4855715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 7907874 - 7907918
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||||||||||||||||| |||||||  ||| |||||||||||    
T  7907874 tataagttataagttgttttgataagctgtcttggagagcttatg 7907918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 34117613 - 34117569
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| ||||||||| |||||||||||| ||| |||||||||||    
T  34117613 tataagctataagttgctttcataagctatcttggagagcttatg 34117569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 10357384 - 10357468
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagctta 313  Q
    ||||| ||||||||||||||||||||||| ||| | ||||  |||||| || ||||||||||||||||| | |||||||||||||    
T  10357384 tatttctataacaaaagataaaataatgttaaatttttttcatataagatacaagttgttttcataagccatcttagagagctta 10357468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 24235802 - 24235732
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactattt--ttataagttataagttgttttcataagcta 299  Q
    ||||| ||||||||||||||| |||| ||||||||||||   |||||| ||||||||||||||||||||||    
T  24235802 tatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcataagcta 24235732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 31337511 - 31337450
Alignment:
Q  240 aacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||||||||||||| |||||||| ||||  ||||||||||||||||| |||||||||||    
T  31337511 aacaaaagataaaataaagtcaaactgtttttatataagttataagttgtattcataagcta 31337450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 1816540 - 1816604
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactattttt--ataagttataagttgttttcataagcta 299  Q
    ||||| |||||||||||||| |||||||| |||||  ||||| ||||||||||||||||||||||    
T  1816540 tataataaaagataaaataaagtcaaactgtttttgtataagatataagttgttttcataagcta 1816604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 33307560 - 33307501
Alignment:
Q  242 caaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagcta 299  Q
    |||||||||||| |||| |||||||||||||||  ||||||||| |||||||||||||||    
T  33307560 caaaagataaaacaatgccaaactatttttatataagttataagatgttttcataagcta 33307501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 53736232 - 53736173
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttttataagttataagttgttttcataa 295  Q
    ||||| |||||||||||||||||||||||||||||||||| |     ||||||||||||||||||    
T  53736232 tatttctataacaaaagataaaataatgtcaaactattttca-----tataagttgttttcataa 53736173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 48364991 - 48364893
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttttat--aagttataagttgttttcataagctaccttagagagcttatgggcatgccataagttgttt 334  Q
    ||||||||||||||||||| |||||| | |||| ||  | |  ||||||||||||||| ||||||||| || ||||||||| ||||  |||||||||||    
T  48364991 ataacaaaagataaaataaagtcaaattgttttcatttacgccataagttgttttcattagctaccttggaaagcttatggacatgttataagttgttt 48364893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 10101595 - 10101510
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttat 314  Q
    ||||| |||||||||||||||||||| || ||| | ||||  |||||| || |||||||||||||||||   ||||||||||||||    
T  10101595 tatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataagccctcttagagagcttat 10101510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 10212520 - 10212435
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttat 314  Q
    ||||| |||||||||||||||||||| || ||| | ||||  |||||| || |||||||||||||||||   ||||||||||||||    
T  10212520 tatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataagccctcttagagagcttat 10212435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 23249551 - 23249597
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatggg 317  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||    
T  23249551 tataagatataagttgttttcataagctatcttagaaagcttatggg 23249597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 24887403 - 24887314
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaac--tatttttataagttataagttgttttcataagctaccttagagagcttatggg 317  Q
    |||||| |||||||| ||||||||||| |||||||  ||||  |||||| || ||| ||||||||||||||| | | |||||||||||||    
T  24887403 ctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcataagctatcctggagagcttatggg 24887314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 40122864 - 40122802
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttttat-aagttataagttgttttcataagcta 299  Q
    ||||||||||||||||||| |||||||| |||| || ||| ||||||||||||| ||||||||    
T  40122864 ataacaaaagataaaataaagtcaaactgttttcataaagctataagttgtttttataagcta 40122802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 54775079 - 54775145
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttttata-agttataagttgttttcataag 296  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||| | ||||||| ||||||| ||||    
T  54775079 tatttctataacaaaagataaaataaagtcaaaccatttttatataattataagctgttttcgtaag 54775145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 659934 - 659897
Alignment:
Q  239 taacaaaagataaaataatgtcaaactatttttataag 276  Q
    |||||||||||||||||| |||||||||||||||||||    
T  659934 taacaaaagataaaataaagtcaaactatttttataag 659897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 28306115 - 28306179
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||||||  |||||||| |||||||| ||||  ||||||||| |||||||||||||||||||    
T  28306115 tataacaaaaagtaaaataaagtcaaactgttttcatataagttacaagttgttttcataagcta 28306179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 37788817 - 37788881
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||||||||||||||||| ||| || ||||||  |||||  ||||||||||||||||||||||    
T  37788817 tataacaaaagataaaataaagtccaattattttcgtataatctataagttgttttcataagcta 37788881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 22232776 - 22232847
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||||||||||||| |||||||||| |||||||| ||||  |||||||  |||| | |||||||||||||    
T  22232776 ctatttatataacaaatgataaaataaagtcaaactgttttcatataagtcgtaagctattttcataagcta 22232847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 23530296 - 23530234
Alignment:
Q  239 taacaaaagataaaataatgtcaaactatttt---tataagttataagttgttttcataagct 298  Q
    |||||||||||||||||| |||||| ||||||   |||||  |||||||||||||||||||||    
T  23530296 taacaaaagataaaataaagtcaaattatttttcatataaagtataagttgttttcataagct 23530234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 32555091 - 32555036
Alignment:
Q  240 aacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcat 293  Q
    ||||||||||||||||| |||||| ||||||  |||||| ||||||||||||||||    
T  32555091 aacaaaagataaaataaagtcaaattattttcctataagctataagttgttttcat 32555036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 44061143 - 44061056
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactattttt--ataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| |||| ||||||||||||||| || ||| | |||||  ||||| ||||||||||||||||| | || |||||||| ||||||    
T  44061143 ctatttctatagcaaaagataaaataaggttaaattgtttttctataagctataagttgttttcatatgatatcttagagaacttatg 44061056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 36646502 - 36646416
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttat 314  Q
    |||||| ||| |||||||||||||||| ||  || | ||||  |||||||||||| |||||||||||||||| | ||||||| ||||    
T  36646502 ctatttctatgacaaaagataaaataaagtataattgttttcatataagttataacttgttttcataagctatcctagagagtttat 36646416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 42084371 - 42084301
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagct 298  Q
    |||||| ||||||||| ||||||||||||||||  | ||||  |||||| ||| |||||||||||||||||    
T  42084371 ctatttctataacaaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 42084301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 43116548 - 43116478
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagct 298  Q
    |||||| |||||||||||||||||| |  |||||| |||||  |||||| ||||||| |||||||||||||    
T  43116548 ctatttctataacaaaagataaaatcaaatcaaacaattttcatataagctataagtcgttttcataagct 43116478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 12923432 - 12923367
Alignment:
Q  243 aaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttaga 306  Q
    |||||||||||||| ||||||||  |||  |||||| |||||||||||||| |||| |||||||||    
T  12923432 aaaagataaaataaagtcaaactgctttcttataagctataagttgttttcctaagttaccttaga 12923367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 20192726 - 20192692
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaac 264  Q
    ||||||||||||||||||||||||||| |||||||    
T  20192726 ctatttatataacaaaagataaaataaagtcaaac 20192692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 24158621 - 24158535
Alignment:
Q  231 tatttatataacaaaaga-taaaataatgtcaaactatttttataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||| ||||||||| || |||| ||| || ||||| ||| ||||||| ||||| ||||||||||||||| | | ||||||||||||    
T  24158621 tatttctataacaaatgaataaagtaaagtgaaactgtttatataagtaataagctgttttcataagctatcctggagagcttatgg 24158535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 27792832 - 27792889
Alignment:
Q  240 aacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataa 295  Q
    ||||||||||||||||| |||||||||||||  |||||| |  |||||||||||||||    
T  27792832 aacaaaagataaaataaggtcaaactattttcatataagctgcaagttgttttcataa 27792889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 30956746 - 30956657
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactattttt--ataagttataagttgttttcataagctaccttagagagcttatggg 317  Q
    |||||| |||| ||||||||||||||| || ||| | |||||  ||| | ||||||||||||||| |||||| ||| |||| ||||||||    
T  30956746 ctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaacttatggg 30956657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 30972558 - 30972469
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactattttt--ataagttataagttgttttcataagctaccttagagagcttatggg 317  Q
    |||||| |||| ||||||||||||||| || ||| | |||||  ||| | ||||||||||||||| |||||| ||| |||| ||||||||    
T  30972558 ctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaacttatggg 30972469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 33882979 - 33883044
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttttat--aagttataagttgttttcata 294  Q
    ||||| |||||||||||||||||||| || ||| |||||||||  |||||||||| | ||||||||    
T  33882979 tatttctataacaaaagataaaataaagtgaaattatttttatgcaagttataagctattttcata 33883044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 33965604 - 33965521
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttttata----agttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||||||||| |||||||| |||||||| |||| |||    || |||||| ||||||||||||||| |||  |||||||||||    
T  33965604 tataacaaaaggtaaaataaagtcaaactgttttcatataaaagctataagatgttttcataagctatcttgaagagcttatgg 33965521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 48397597 - 48397666
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactattttta--taagttataagttgttttcataagct 298  Q
    ||||| ||||| |||||||||||||| |||||| | ||||||  |||| |||||||||||||||| ||||    
T  48397597 tatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttttcattagct 48397666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 328
Target Start/End: Complemental strand, 21872375 - 21872291
Alignment:
Q  246 agataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgggcatgccataag 328  Q
    ||||||||||| |||||| | ||||  |||||| |||||||||||||||||||||| | | || || |||||| |||| ||||||    
T  21872375 agataaaataaggtcaaatttttttgatataagctataagttgttttcataagctatcctggaaagtttatggacatgtcataag 21872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 25183109 - 25183037
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||| ||||||||||||| |||||| || || |||||||  ||| || |||||| |||||||||||||||    
T  25183109 actatttttataacaaaagattaaataaagttaagctattttcatatgagctataagctgttttcataagcta 25183037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 38462231 - 38462319
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||| |||| ||||||||||||||| |||||||| ||||  |||| | |||||  ||||||||||||||| |  ||| |||||||||    
T  38462231 ctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcataagctatccaagatagcttatgg 38462319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 53457335 - 53457372
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttttataa 275  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  53457335 ataacaaaagataaaataaagtcaaactattttcataa 53457372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 1395621 - 1395661
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt 270  Q
    |||||| |||||||||||||||||||| |||||| ||||||    
T  1395621 ctatttctataacaaaagataaaataaagtcaaattatttt 1395661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 39602287 - 39602243
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    ||||||||||||| ||||||||||||||| ||| |||| ||||||    
T  39602287 tataagttataagctgttttcataagctatctttgagaacttatg 39602243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 49587036 - 49586996
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt 270  Q
    |||||| |||||||||||||||||||| |||||||| ||||    
T  49587036 ctatttctataacaaaagataaaataaagtcaaactgtttt 49586996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 1402946 - 1403017
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||| |||||||||||||||||||| || ||||||||||  |||||| ||||| ||||||||||||||||    
T  1402946 ctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagcta 1403017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 4248916 - 4249025
Alignment:
Q  238 ataacaaaagataaaataatgtcaaact-atttt-tataagttataagttgttttcataagctaccttagagagcttatgggcatgccataagttgttta 335  Q
    ||||||||||||||||||| |||||| | ||||| |||||   ||||| ||||||| ||||||| ||  |||||||||||| ||||||||||| |||||     
T  4248916 ataacaaaagataaaataaagtcaaattgattttgtataaacaataaggtgttttcctaagctatctcggagagcttatggacatgccataaggtgtttt 4249015  T
Q  336 tataagctct 345  Q
     |||||||||    
T  4249016 cataagctct 4249025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 2027526 - 2027455
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||| |||||||||||||||||||| |||||||||||||  |||||  |||||| |||| ||||||||||    
T  2027526 ctatttttataacaaaagataaaataaagtcaaactattttcatataacctataagctgttctcataagcta 2027455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 2117353 - 2117439
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttat 314  Q
    |||||| ||| ||||| ||||||| || |||||||||||||  |||||  ||||||||||||||||||| || | ||||||||||||    
T  2117353 ctatttctatgacaaaggataaaacaaagtcaaactattttcatataatctataagttgttttcataagttatcctagagagcttat 2117439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 2514652 - 2514722
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagct 298  Q
    |||||| ||||| |||||||||||||| ||||||||| |||||||  || |||||||| ||||||||||||    
T  2514652 ctatttctataataaaagataaaataaagtcaaactaattttatatgagctataagttattttcataagct 2514722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 4006665 - 4006735
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagcta 299  Q
    ||||| ||||||||| |||||||||| |||||| | ||||||||  || ||||||||||||||||||||||    
T  4006665 tatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataagcta 4006735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 5328925 - 5328991
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttttata-agttataagttgttttcataag 296  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||| | ||||||| ||||||| ||||    
T  5328925 tatttctataacaaaagataaaataaagtcaaaccatttttatataattataagctgttttcgtaag 5328991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 33787866 - 33787777
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||||| |||||||||| |||||| || |||||| |  |||  ||||||||||||| |||||||||||| || ||| ||||||||||||    
T  33787866 actatttctataacaaaatataaaacaaagtcaaattgatttcatataagttataagctgttttcataagttatcttggagagcttatgg 33787777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 5564249 - 5564178
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtc-aaactatttttataa--gttataagttgttttcataagct 298  Q
    ||||||||||| ||||||||||||| |  || |||||||||||||||  ||||| |||||||||||||||||    
T  5564249 ctatttatatagcaaaagataaaatgaaatcgaaactatttttataaatgttatcagttgttttcataagct 5564178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 10452480 - 10452413
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataa 295  Q
    |||||| |||||||||| |||||||||  ||||||||||||  |||||| |||||||||||| |||||    
T  10452480 ctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgtttccataa 10452413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 25100039 - 25100079
Alignment:
Q  274 aagttataagttgttttcataagctaccttagagagcttat 314  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  25100039 aagttataagttgttttcataagctatcttaaagagcttat 25100079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 31812090 - 31812046
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| |||||||||||||||||||||| ||| |||||||||||    
T  31812090 tataagatataagttgttttcataagctatcttggagagcttatg 31812046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 281961 - 281880
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||||||||||||||||| |||||  | ||||  |||||| |||||| ||| ||||||||||| | ||||||||| ||||    
T  281961 tataacaaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatgg 281880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 4420607 - 4420681
Alignment:
Q  242 caaaagataaaataatgtcaaactatttttataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||||||||||||| |||||||||||||| ||     |||||| ||||| ||||||| ||| ||||||||||||    
T  4420607 caaaagataaaataaagtcaaactatttttgtataagctaagttattttcctaagctatcttggagagcttatgg 4420681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 313
Target Start/End: Complemental strand, 9093676 - 9093591
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagctta 313  Q
    |||||| |||| ||||||||||||||| || ||| | ||||  |||||| |||||| ||||||||||||||  |||||||| ||||    
T  9093676 ctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcataagctgtcttagagaactta 9093591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 5551412 - 5551445
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaa 263  Q
    ||||||||||||||||||||||||||| ||||||    
T  5551412 ctatttatataacaaaagataaaataaagtcaaa 5551445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 7354153 - 7354221
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataa 295  Q
    ||||||| ||||||||||||||||||||  || |||||||||  |||||| || ||| |||||||||||    
T  7354153 actatttctataacaaaagataaaataaaatcgaactattttcatataagatacaagctgttttcataa 7354221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 28660885 - 28660813
Alignment:
Q  225 tattactatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataa 295  Q
    ||||| ||||| |||||||| ||||||||||| || ||| ||||||  ||||| |||||| ||||||||||||    
T  28660885 tattaatatttttataacaatagataaaataaagttaaattattttcatataaattataaattgttttcataa 28660813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 1497943 - 1498018
Alignment:
Q  242 caaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| |||||||| |||||||| |||| |||  |||||||||  |||||||||| ||| ||| |||||||||||    
T  1497943 caaaaggtaaaataaagtcaaactgttttcatatgagttataagaagttttcataaactatcttggagagcttatg 1498018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 6647380 - 6647424
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||| |||||||  ||||||||||||||| |||||||||||||||    
T  6647380 tataggttataatctgttttcataagctatcttagagagcttatg 6647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 28531660 - 28531628
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaa 263  Q
    |||||||||||||||||||||||||| ||||||    
T  28531660 tatttatataacaaaagataaaataaagtcaaa 28531628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 31338008 - 31338068
Alignment:
Q  286 gttttcataagctaccttagagagcttatgggcatgccataagttgtttatataagctctc 346  Q
    |||||| | |||||| || |||||||||||| |||| ||||||||||||  ||||||||||    
T  31338008 gttttcctgagctactttggagagcttatggacatgtcataagttgttttcataagctctc 31338068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 35099030 - 35099066
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagag 307  Q
    |||| |||||||||||||||||||||||| |||||||    
T  35099030 tatatgttataagttgttttcataagctatcttagag 35099066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 28467420 - 28467342
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttat 314  Q
    |||||||||||||||||||| |||||| ||||||  |||||| || ||||||||||||||||||| | ||||||||||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataagctagc-tagagagcttat 28467342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 27738337 - 27738229
Alignment:
Q  194 ttgtttatcacatatgtgcttatgtatatactattactattta-tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgtttt 290  Q
    |||||||||| |||||||||| || ||| | |||| ||||||  || ||||||||||||||||| |||||| | ||||  |||||| ||||| |||||||    
T  27738337 ttgtttatcatatatgtgcttttgcataaattatttctattttctacaacaaaagataaaataaagtcaaattgttttcatataagctataatttgtttt 27738238  T
Q  291 cataagcta 299  Q
    |||||||||    
T  27738237 cataagcta 27738229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 40304174 - 40304075
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgggcatgccataa 327  Q
    |||||||||||||||||||||||||||  ||| | | ||||  ||||||||||||| ||||||||||| ||| | |||| || ||||||||||| |||||    
T  40304174 ctatttatataacaaaagataaaataaaatcacattgttttcatataagttataagctgttttcataa-ctatcctagatagtttatgggcatgtcataa 40304076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 4548684 - 4548755
Alignment:
Q  243 aaaagataaaataatgtcaaactatttttat--aagttataagttgttttcataagctaccttagagagctt 312  Q
    |||||||||||||| |||||||| |||||||  |||| ||||| ||||||||||||||| ||| ||||||||    
T  4548684 aaaagataaaataaagtcaaactgtttttatacaagtcataagctgttttcataagctatcttggagagctt 4548755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 29266161 - 29266270
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt----tataagttataagttgttttcataagctaccttagagagcttatgggcatgcca 324  Q
    ||||||||| |||||||||||||||| | |||||||| ||||    |||||| || ||||||||||||||||||||| || ||||  | ||| | | |||    
T  29266161 actatttatgtaacaaaagataaaatgacgtcaaactcttttcatatataagctagaagttgttttcataagctaccctaaagagtgtgtggactttcca 29266260  T
Q  325 taagttgttt 334  Q
    ||||||||||    
T  29266261 taagttgttt 29266270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 5422029 - 5421955
Alignment:
Q  241 acaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagctta 313  Q
    |||||||||||||||  |||||| | ||||  |||||| ||||||||||||| |||||||| |||||||||||||    
T  5422029 acaaaagataaaatatagtcaaattgttttcttataagctataagttgttttgataagctatcttagagagctta 5421955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 316
Target Start/End: Original strand, 16322778 - 16322887
Alignment:
Q  209 gtgcttatgtatatactatta-ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttag 305  Q
    ||||||||||||| ||||| | |||||| |||| ||||||||||||||  |||||||||||||  || |||||||||| |||||||||| ||||  ||      
T  16322778 gtgcttatgtata-actataaactatttttatatcaaaagataaaatatagtcaaactattttcatagaagttataagctgttttcataggctattttga 16322876  T
Q  306 agagcttatgg 316  Q
    |||||||||||    
T  16322877 agagcttatgg 16322887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 48064261 - 48064327
Alignment:
Q  232 atttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataag 296  Q
    |||| |||| ||||||||||||||| || ||||||||||  |||||||||||||||| |||||||||    
T  48064261 atttctatagcaaaagataaaataaagtaaaactatttttgtataagttataagttgatttcataag 48064327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 1730842 - 1730928
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactattt-ttataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| | |||| ||||||||||||| ||||||||||||  | ||||||||||||| ||||||||||| | ||| ||||| |||||    
T  1730842 ctatttttttaaccaaagataaaataaagtcaaactatttcatgtaagttataagttattttcataagcaatcttggagagtttatg 1730928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 23902144 - 23902099
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||||    
T  23902144 tataagctataagttgttttcaaaagctatcttagagagcttatgg 23902099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 25479538 - 25479618
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| ||||||||||||| |||||| | | ||  |||| | |||||||||||||||||||||| | |||||||||||||    
T  25479538 tataaccaaagataaaataacgtcaaattgtcttcatataggctataagttgttttcataagctatcctagagagcttatg 25479618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 29007835 - 29007771
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcat 293  Q
    ||||| |||||||||||| ||| ||| |||||||||||||  |||||| ||||||||||||||||    
T  29007835 tatttctataacaaaagaaaaattaaagtcaaactattttcatataagctataagttgttttcat 29007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 49517021 - 49517096
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctacctta 304  Q
    ||||| |||||||||||||||||||| |||||| | ||||  | |||| |||||| ||||||||||||||| ||||    
T  49517021 tatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataagctagctta 49517096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 10199527 - 10199441
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    ||||| ||||||  |||||||||||| |||||||||||||  |||||   ||||| | |||||||||||||  ||||||||||||||    
T  10199527 tatttctataacccaagataaaataaagtcaaactattttcgtataatcgataagcttttttcataagctattttagagagcttatg 10199441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 15360845 - 15360903
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgt 287  Q
    ||||| |||||||||||||||||||| |||||||| ||||  |||||| ||||||||||    
T  15360845 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 30371104 - 30371166
Alignment:
Q  236 atataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataag 296  Q
    |||||||||||||||||||||  ||||| | ||||  |||||| |||||||||||||||||||    
T  30371104 atataacaaaagataaaataaactcaaattgttttcatataagctataagttgttttcataag 30371166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 42556750 - 42556680
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagcta 299  Q
    ||||| ||| ||||||||| ||||||  |||||||| |||||||  || ||||||||||||||||||||||    
T  42556750 tatttctatgacaaaagatgaaataaaatcaaactacttttatataagctataagttgttttcataagcta 42556680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 45205031 - 45205089
Alignment:
Q  243 aaaagataaaataatgtcaaactattt--ttataagttataagttgttttcataagcta 299  Q
    |||||||||||||| ||||||||||||   |||||| || |||||||||||||||||||    
T  45205031 aaaagataaaataaagtcaaactatttccatataagctagaagttgttttcataagcta 45205089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 47002986 - 47002888
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctaccttagagagcttatgggcatgccataagttgttt 334  Q
    |||| |||||||||||||| || ||| | ||||||||  ||||| || |||||||||||||||| | |  |||| |||||| |||| ||||||||||||    
T  47002986 ataataaaagataaaataaagttaaattgtttttatacaagttagaaattgttttcataagctatcatgtagagtttatggacatgtcataagttgttt 47002888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 48830195 - 48830125
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||| ||| || ||||||||||||| |||||||||||||  |||||| |||||  |||||||||||||||    
T  48830195 tatttctattaccaaagataaaataaagtcaaactattttcatataagctataaactgttttcataagcta 48830125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 313
Target Start/End: Complemental strand, 5756806 - 5756721
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagctta 313  Q
    |||||| ||||||||||||| | |||| || ||||| ||||  ||||| ||||||||||||||| ||||||| | | |||||||||    
T  5756806 ctatttctataacaaaagatgatataaagttaaactgttttcatataaattataagttgttttcgtaagctagcctggagagctta 5756721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 7274058 - 7273973
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttat 314  Q
    ||||| ||||||||||||| |||||| |||||| | ||||  || |||||||||| ||||| ||||| |||||||  |||||||||    
T  7274058 tatttttataacaaaagatgaaataaagtcaaattgttttcatacaagttataagctgtttccataaactaccttgaagagcttat 7273973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 40943494 - 40943445
Alignment:
Q  240 aacaaaagataaaataatgtcaaactattt--ttataagttataagttgt 287  Q
    ||||||||||||||||| |||||||| |||  ||||||||||||||||||    
T  40943494 aacaaaagataaaataaagtcaaactgtttaattataagttataagttgt 40943445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 42352026 - 42351980
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttataag 276  Q
    |||||| ||||||||||| |||||||| ||||||||||||| |||||    
T  42352026 ctatttctataacaaaagttaaaataaagtcaaactattttcataag 42351980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 4363745 - 4363681
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||||||||| ||||||||||||||| ||||  |||||| |||||  | |||||||||||||    
T  4363745 tataacaaaagattaaataatgtcaaactgttttcatataagctataacctattttcataagcta 4363681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 4576762 - 4576826
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagcta 299  Q
    ||||||||||||| |||||| || ||| ||||||| ||  ||||||||| |||||||||||||||    
T  4576762 tataacaaaagattaaataaagttaaaatatttttgtacaagttataagctgttttcataagcta 4576826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 10581186 - 10581126
Alignment:
Q  241 acaaaagataaaataatgtcaaactatttttat--aagttataagttgttttcataagcta 299  Q
    ||||| |||||||||| |||||||| |||| ||  ||| ||||||||||||||||||||||    
T  10581186 acaaaggataaaataaagtcaaacttttttcatttaagctataagttgttttcataagcta 10581126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 33186077 - 33185997
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctaccttagaga 308  Q
    |||||| ||| ||| |||||||||||| ||| || | ||||||||  |||||||||||||||| |||||||| | ||||||    
T  33186077 ctatttctattacagaagataaaataaggtcgaattgtttttatacaagttataagttgtttttataagctatcctagaga 33185997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 33976679 - 33976724
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||||||||||||||||||| ||| ||| | ||||||||||||||    
T  33976679 tataagttataagttgttttcttaacctatcctagagagcttatgg 33976724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 46980242 - 46980182
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataa 295  Q
    |||| ||||||||||||||| | |||||| ||||  |||||||||||| ||||||||||||    
T  46980242 tatatcaaaagataaaataaagacaaactgttttcatataagttataaattgttttcataa 46980182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 9507120 - 9507080
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt 270  Q
    |||||| ||||||||||| ||||||||||| ||||||||||    
T  9507120 ctatttctataacaaaagttaaaataatgttaaactatttt 9507080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 15565940 - 15565881
Alignment:
Q  242 caaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||||||||||| |||||||||||||  |||||  |||||| ||||||| |||||||    
T  15565940 caaaagataaaataaagtcaaactatttttgtataaactataagctgttttcttaagcta 15565881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 25006135 - 25006068
Alignment:
Q  249 taaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttat 314  Q
    |||||||| |||||| | ||||  |||||| |||||||||||||||||||||| ||| |||| |||||    
T  25006135 taaaataaagtcaaattgttttcatataagctataagttgttttcataagctatcttggagatcttat 25006068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 36151617 - 36151562
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttc 291  Q
    ||||||||||||||||||| |||||| | ||||  |||||||||||| ||||||||    
T  36151617 ataacaaaagataaaataaagtcaaattgttttcgtataagttataaattgttttc 36151562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 38578477 - 38578544
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataa 295  Q
    |||||| ||||||||||||||| |||| || ||| ||||||  |||||| |||||||||||| |||||    
T  38578477 ctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgtttacataa 38578544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 39270502 - 39270458
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| |||||| ||||||||||||||||| |||||||| ||||    
T  39270502 tataagatataagctgttttcataagctaccatagagagcatatg 39270458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 43420216 - 43420279
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||| ||||||||||||| |||||||| ||||  ||||||||  ||||| |||||||||||||    
T  43420216 ataacgaaagataaaataaagtcaaactttttttatataagttgcaagttattttcataagcta 43420279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 49167046 - 49167109
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttataagttataagttgttttcataag 296  Q
    |||||| ||||| |||||| ||||||| |||||||||   |||||||||||| ||||||| ||||||    
T  49167046 ctatttttataataaaagaaaaaataaagtcaaacta---ttataagttatatgttgtttccataag 49167109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 49888760 - 49888804
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| ||| |||||||||||||||||| |||||||| ||||||    
T  49888760 tataagctattagttgttttcataagctatcttagagaacttatg 49888804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 10437837 - 10437920
Alignment:
Q  232 atttatataacaaaagataaaataatgtcaaactatttt-tataagttataagttgttttcataagctaccttagagagcttat 314  Q
    |||| |||||||||||||||||||| |||||||| |||| |||||| | ||||| | |||||||||||| ||| ||||||||||    
T  10437837 atttctataacaaaagataaaataaagtcaaactgttttatataagctttaagtaggtttcataagctatcttcgagagcttat 10437920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 38561677 - 38561743
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactattttta--taagttataagttgttttcataa 295  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||   ||||||||||||||||||    
T  38561677 tatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcataa 38561743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 9836974 - 9836886
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||| ||||||||  |||||| ||| |||||||||||||  ||||||||| ||  ||||||||||||||| ||| ||||||||||||    
T  9836974 ctatttttataacaactgataaagtaaagtcaaactattttcatataagttacaacctgttttcataagctatcttggagagcttatgg 9836886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 2107392 - 2107344
Alignment:
Q  285 tgttttcataagctaccttagagagcttatgggcatgccataagttgtt 333  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  2107392 tgttttcataagctatcttggagagcttatggacatgccataagttgtt 2107344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 6864562 - 6864495
Alignment:
Q  247 gataaaataatgtcaaactatttttat--aagttataagttgttttcataagctaccttagagagctt 312  Q
    |||||||||| ||||||||||||| ||  ||||||||||||||||||||||||||  || ||||||||    
T  6864562 gataaaataaagtcaaactattttcatgtaagttataagttgttttcataagctattttggagagctt 6864495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 27728141 - 27728070
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    |||||| ||||| |||||||||||||| |||||||||||||  |||||  ||| ||||||||||||||||||    
T  27728141 ctatttctataaaaaaagataaaataaagtcaaactattttcatataaagtattagttgttttcataagcta 27728070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 31862451 - 31862530
Alignment:
Q  238 ataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||||||||||| |||| ||||||||||| |  |||||| |||||| |||||||||||| || | |||||||||||||    
T  31862451 ataacaaaagataatataaagtcaaactattctcgtataagctataagatgttttcataagttatcctagagagcttatg 31862530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 34770853 - 34770948
Alignment:
Q  241 acaaaagataaaataatgtcaaactatttttat--aagttataagttgttttcataagctaccttagagagcttatgggcatgccataagttgttt 334  Q
    |||||||||||||||| |||||| | |||| ||  ||| |||||||||||||||||||||| | ||||||| | |||| |||| |||||| |||||    
T  34770853 acaaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataagctatcctagagagttcatggacatgtcataagctgttt 34770948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 20672725 - 20672768
Alignment:
Q  233 tttatataacaaaagataaaataatgtcaaactatttttataag 276  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  20672725 tttatataacaaaagataaaataaagtcaaactgtttttataag 20672768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 4558748 - 4558836
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||| ||||| |||||||||||||| || ||| ||||||  |||| | |||||| ||||| ||||||||| | ||||||||||||||    
T  4558748 ctatttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagctatcctagagagcttatgg 4558836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 9956932 - 9956847
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttataagttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||| |||||||||||||||||||| ||   | | ||  ||||||||||||||||||||||||| ||| ||| |||| ||||||    
T  9956932 ctatttctataacaaaagataaaataaagttttatttttcctataagttataagttgttttcataatctatcttggagaacttatg 9956847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 29973031 - 29973119
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactattttta--taagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||| | ||||| ||| |||||||| ||||||||||||| |  |||| |||||||||||||||||||||| | | ||||| ||||||    
T  29973031 ctatttctttaacacaaggtaaaataaagtcaaactattttcacataagctataagttgttttcataagctatccttgagagtttatgg 29973119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 10075643 - 10075584
Alignment:
Q  258 gtcaaactatttttata--agttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||||||||||||||||  ||||||||| | ||||||||||||| | |||||||||||||    
T  10075643 gtcaaactatttttatataagttataagctattttcataagctatcctagagagcttatg 10075584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 8799356 - 8799426
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactattt--ttataagttataagttgttttcataagcta 299  Q
    ||||| |||||||||||||||||||| ||||||||||||    |||| ||||||| |||||| ||||||||    
T  8799356 tatttctataacaaaagataaaataaagtcaaactatttccagataaattataaggtgtttttataagcta 8799426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 26820150 - 26820189
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactatttt 270  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  26820150 tatttctataacaaaagataaaataaagtcaaactatttt 26820189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 30627977 - 30627934
Alignment:
Q  273 taagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||| ||||||||||||||||||| || ||||||||||||||||    
T  30627977 taagctataagttgttttcataagttatcttagagagcttatgg 30627934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 273
Target Start/End: Complemental strand, 31315573 - 31315530
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttat 273  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||    
T  31315573 ctatttttataataaaagataaaataaagtcaaactatttttat 31315530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 31915382 - 31915260
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctaccttagagagcttatgggcatgccataagttgttt 334  Q
    |||||||||||||| ||||| |||||| | |||| |||  || |||||| ||| ||  ||||||| | | |||||||||||| | || ||||||||||||    
T  31915382 tataacaaaagatagaataaagtcaaattgttttcatacaaggtataagatgtctttgtaagctatcctggagagcttatggacttgtcataagttgttt 31915283  T
Q  335 atataagctctctaaaatagtct 357  Q
     |||||||| ||| ||| |||||    
T  31915282 gtataagctttctcaaacagtct 31915260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 11188268 - 11188187
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctaccttagagagcttatgg 316  Q
    ||||||||||||||||||||   |||||||||||||||  ||||||||  | |||| |||||||| | ||||||| ||||||    
T  11188268 tataacaaaagataaaataaaaccaaactatttttatattagttataaactattttgataagctatcctagagagtttatgg 11188187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 24558802 - 24558883
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagaga 308  Q
    ||||||||| ||||||||||||||   | || ||| ||||||  |||||| |||||||||||||||||||||| ||| ||||    
T  24558802 actatttatgtaacaaaagataaaccgaagttaaattattttcgtataagctataagttgttttcataagctatcttggaga 24558883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 28769452 - 28769371
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||||||  ||||||| | |||||||||||||  |||||| |||||| |||||||||||||||  || ||||| ||||||    
T  28769452 tataacaaactataaaattaagtcaaactattttcttataagctataagctgttttcataagctattttggagagtttatgg 28769371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 30600467 - 30600398
Alignment:
Q  232 atttatataacaaaagataaaataatgtcaaactattttt--ataagttataagttgttttcataagcta 299  Q
    |||| |||| |||||  |||||||| ||| ||||||||||  ||||||||||||||||||||||| ||||    
T  30600467 atttctatagcaaaaactaaaataaagtcgaactatttttgtataagttataagttgttttcatatgcta 30600398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 33714348 - 33714270
Alignment:
Q  237 tataacaaaagataaaataatgtcaaactatttt-tataagttataagttgttttcataagctaccttagagagcttat 314  Q
    ||||||| |||||||||||| ||||||||||||| || ||  |||||| | ||||||||||||| ||  ||||||||||    
T  33714348 tataacacaagataaaataaagtcaaactattttgtacaatctataagctattttcataagctatctgggagagcttat 33714270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 35869797 - 35869858
Alignment:
Q  240 aacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataagcta 299  Q
    ||||||| |||||||||  |||||| |||||  |||||| ||||||||||||||||||||||    
T  35869797 aacaaaatataaaataaattcaaacaattttcatataagctataagttgttttcataagcta 35869858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 42597351 - 42597420
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttat--aagttataagttgttttcataagc 297  Q
    |||||| |||||||||||||||||||| || ||| | |||| ||  ||| ||||||||||||||||||||    
T  42597351 ctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttcataagc 42597420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 2605968 - 2606040
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaactatt--tttataagttataagttgttttcataagcta 299  Q
    ||||||| ||| |||||||||||||| | |||||||||||  | |||||||  |||| |||||||||||||||    
T  2605968 actatttctatgacaaaagataaaattaagtcaaactatttctatataagtcttaagctgttttcataagcta 2606040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 8062322 - 8062367
Alignment:
Q  271 tataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||| |||||| ||||||||||||||| ||||||||| ||||||    
T  8062322 tataagctataagctgttttcataagctatcttagagagattatgg 8062367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 8066958 - 8066917
Alignment:
Q  233 tttatataacaaaagataaaataatgtcaaactatttttata 274  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  8066958 tttatataacaaaagataaaataaagtcaaactggttttata 8066917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 28784915 - 28784831
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttata--agttataagttgttttcataagctaccttagagagctt 312  Q
    |||||| || || |||||||||||||| |||||| | |||| |||  |||| |||| | ||||||||||||| ||||||||||||    
T  28784915 ctatttctaaaataaaagataaaataaagtcaaattgttttgatatcagttgtaagctattttcataagctatcttagagagctt 28784831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 34551073 - 34551157
Alignment:
Q  233 tttatataacaaaagataaaataatgtcaaactatttttat--aagttataagttgttttcataagctaccttagagagcttatg 315  Q
    ||||||||||||||||||| || | |||||| | |||| ||  |||||||||||||||||| |||| || | | |||||||||||    
T  34551073 tttatataacaaaagataacatcaagtcaaattgttttcatttaagttataagttgttttcttaagttatcctggagagcttatg 34551157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 1470976 - 1470909
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt--tataagttataagttgttttcataa 295  Q
    |||||| ||||| |||||||||||||| |||||| || |||  |||||| |||||| |||||||||||    
T  1470976 ctatttctataataaaagataaaataaagtcaaattactttcatataagctataagctgttttcataa 1470909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 1664333 - 1664401
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttataagttataagttgttttcataagct 298  Q
    |||||| ||||||||||| |||||||| ||  |||| |||| | |||||| |||||||||||| |||||    
T  1664333 ctatttttataacaaaaggtaaaataaagttgaacttttttcacaagttaaaagttgttttcacaagct 1664401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 6509408 - 6509337
Alignment:
Q  245 aagataaaataatgtcaaact--atttttataagttataagttgttttcataagctaccttagagagcttat 314  Q
    |||||||||||| |||||| |  |||| |||||| |||||| ||||||||||||||| | | ||||||||||    
T  6509408 aagataaaataaagtcaaattgtatttatataagctataagctgttttcataagctatcctggagagcttat 6509337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 6918299 - 6918259
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt 270  Q
    |||||||||||| |||||||||||||| |||||||| ||||    
T  6918299 ctatttatataataaaagataaaataaagtcaaactgtttt 6918259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 26215446 - 26215486
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttt 270  Q
    |||||| |||||||||||||||||||| || ||||||||||    
T  26215446 ctatttctataacaaaagataaaataaagttaaactatttt 26215486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 26473825 - 26473785
Alignment:
Q  275 agttataagttgttttcataagctaccttagagagcttatg 315  Q
    |||| |||||||||||||||||||| | |||||||||||||    
T  26473825 agttgtaagttgttttcataagctatcctagagagcttatg 26473785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 39392782 - 39392746
Alignment:
Q  229 actatttatataacaaaagataaaataatgtcaaact 265  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  39392782 actatttctataacaaaagataaaataaagtcaaact 39392746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 40728537 - 40728497
Alignment:
Q  231 tatttatataacaaaagataaaataatgtcaaactattttt 271  Q
    ||||| |||||||||||||||||||| |||||||| |||||    
T  40728537 tatttctataacaaaagataaaataaagtcaaactgttttt 40728497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 160085 - 160009
Alignment:
Q  237 tataacaaaagataaaataatgtcaaact-atttttataagttataagttgttttcataagctaccttagagagctt 312  Q
    |||| ||||||||||||||| |||||||| | |  ||||||||||||| ||||||||||||||| | || |||||||    
T  160085 tatagcaaaagataaaataaagtcaaactgaatcatataagttataagatgttttcataagctatcctaaagagctt 160009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 1194 - 1156
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatt 268  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  1194 ctatttctataacaaaagataaaataaagtcaaactatt 1156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 2781 - 2819
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatt 268  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  2781 ctatttctataacaaaagataaaataaagtcaaactatt 2819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 143181 - 143111
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaact-atttttataagttataagttgttttcataagcta 299  Q
    |||||| ||||||| |||||||||||||||||||||  ||| |||||  |||||| || ||||||||||||    
T  143181 ctatttctataacacaagataaaataatgtcaaactgctttgtataacctataagctgatttcataagcta 143111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 6774 - 6842
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtcaaactatttttataagttataagttgttttcataagct 298  Q
    |||||| ||||||||||| |||||||| ||  |||| |||| | |||||| |||||||||||| |||||    
T  6774 ctatttttataacaaaaggtaaaataaagttgaacttttttcacaagttaaaagttgttttcacaagct 6842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 23861 - 23951
Alignment:
Q  230 ctatttatataacaaaagataaaataatgtc-aaactattttt---ataagttataagttgttttcataagctaccttagagagcttatgg 316  Q
    |||||| ||||||||||||| ||||||  || |||||||||||   ||||| |||||||  ||||||||||||| |||  |||||||||||    
T  23861 ctatttctataacaaaagatgaaataaactctaaactatttttgatataagatataagtgattttcataagctatcttgtagagcttatgg 23951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University