View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16808_low_17 (Length: 316)

Name: NF16808_low_17
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16808_low_17
NF16808_low_17
[»] chr8 (1 HSPs)
chr8 (1-300)||(577777-578076)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 578076 - 577777
Alignment:
Q  1 cttgttgactaagatcagattcaggggccttaaagaaatgtgctgaaacctcaggaccaatcaaaaaggtaatatttttatgaaagattttcaatgtgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  578076 cttgttgactaagatcagattcaggggccttaaagaaatgtgctgaaacctcaggaccaatcaaaaaggtaatatttttatgaaagattttcaatgtgaa 577977  T
Q  101 aacaccaccaagttttgggtattcttcacggagcaatataattggacctttaaggaaacgaagaagtcctccaataatgggccatccttgaagaattggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  577976 aacaccaccaagttttgggtattcttcacggagcaatataattggacctttaaggaaacgaagaagtcctccaataatgggccatccttgaagaattggg 577877  T
Q  201 ggtaaacgnnnnnnngatttgggtattatgaatgatgagatgagtttagcggcgattaaggttatgattaggaggaggagggtgttgaggaacttgtttc 300  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  577876 ggtaaacgttttttggatttgggtattatgaatgatgagatgagtttagcggcgattaaggttgtgattaggaggaggagggtgttgaggaacttgtttc 577777  T

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