View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_low_19 (Length: 290)
Name: NF16808_low_19
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 64 - 272
Target Start/End: Original strand, 3077829 - 3078040
Alignment:
| Q |
64 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacacc---ttctcctccacactccaattgttctctgttat |
160 |
Q |
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| T |
3077829 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacaccctcttctcctctacactccaattgttctctattat |
3077928 |
T |
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| Q |
161 |
ccatctatcttccaactttgcatacaatgatttaaccgtaaaaattccatcctcttccatcttccacacccaaacatctgcacctgtcgaccacacatga |
260 |
Q |
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| T |
3077929 |
ccatctatcttccaactttgcatacaatgatttaaccgtaaaaatcccatcctcttccatcttccacacccaaacatctgcacctgtcgaccacacatga |
3078028 |
T |
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| Q |
261 |
ccctccaaatcg |
272 |
Q |
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|||| ||||||| |
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| T |
3078029 |
cccttcaaatcg |
3078040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 44692837 - 44692722
Alignment:
| Q |
2 |
acctccggggggaagggcattcctcctactaagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagcc |
101 |
Q |
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| T |
44692837 |
acctccgggggga-gggcattccttctacgaagattccaccgcgtcggaatacgatcaagcaaaactttccaagaaagggccaccacttttgacggagcc |
44692739 |
T |
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| Q |
102 |
ggacttttccaaagttg |
118 |
Q |
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| T |
44692738 |
gggcttttccaaagttg |
44692722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 15316260 - 15316226
Alignment:
| Q |
81 |
gccaccaccttagacggagccggacttttccaaag |
115 |
Q |
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| T |
15316260 |
gccacaaccttagacggagccggacttttccaaag |
15316226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 34866364 - 34866626
Alignment:
| Q |
12 |
ggaagggcattcctcctactaagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttcc |
111 |
Q |
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|||||||| || | ||| |||||||| || |||| ||| |||||||||||||| || |||| ||||| |||||||| || || || ||||| ||||||| |
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| T |
34866364 |
ggaagggcgtttcgccttctaagattcaatcgcgacggaatacgatcaagcaagactttccaagaaagggccaccacttttgagggggccgggcttttcc |
34866463 |
T |
|
| Q |
112 |
aaagttgggtaaacac---cttctcctccacactccaattgttctctgttatccatctatcttccaactttgcatacaatgatttaaccgtaaaaattcc |
208 |
Q |
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|||||||| |||||| | |||||||||||||||||||||||| |||||||| |||| ||||| ||||||| ||||| ||||| || | || |
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| T |
34866464 |
aaagttggagaaacactctcaactcctccacactccaattgttctccacaatccatctcccttcaaacttcgcatacatagatttcaccgtgaatttccc |
34866563 |
T |
|
| Q |
209 |
atcctcttccatcttccacacccaaacatctgcacctgtcgaccacacatgaccctccaaatc |
271 |
Q |
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| T |
34866564 |
ttcgtcttccatcctccacacccatctgtcttcaccgttagaccacacatgcccctccaaatc |
34866626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 14248764 - 14248813
Alignment:
| Q |
70 |
tccacgaaagtgccaccaccttagacggagccggacttttccaaagttgg |
119 |
Q |
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| T |
14248764 |
tccaagaaagagccaccgccttagacggagccggactcttccaaatttgg |
14248813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 5008679 - 5008743
Alignment:
| Q |
60 |
agcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaa |
124 |
Q |
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||||||||| |||| || |||||||||||||| | ||||||||| | ||||||||||| ||||| |
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| T |
5008679 |
agcaaaaccttccaagagagtgccaccaccttcaaaggagccggattcttccaaagttgcgtaaa |
5008743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 47337317 - 47337409
Alignment:
| Q |
32 |
aagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaa |
124 |
Q |
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| T |
47337317 |
aagattcaaacgggtcggtatacgattaagcaaagatctccaagagagcgccaccaccttagaaggagccgggctcttccaaacttggctaaa |
47337409 |
T |
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