View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_low_2 (Length: 837)
Name: NF16808_low_2
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 31996154 - 31996343
Alignment:
| Q |
14 |
tcatcacccaaaactaaaccttctacttcacccttctcattcaactcggtaggttccactaaaccctctaaacccaaaaccaaaccctcattcttcacac |
113 |
Q |
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| T |
31996154 |
tcatcacccaaaactaaaccttcaacttcacccttctcattcaactcggtaggttccactaaaccctctaaacccaaaaccaaaccctcattcttcacac |
31996253 |
T |
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| Q |
114 |
gtacccttttcttcctaacaacttctccaccaccaccaacagaacccttcctcgccggagtttgagatctcaacccttccctcatttctc |
203 |
Q |
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| T |
31996254 |
gtacccttttcttcctaacaacttctccaccaccaccaacagaacccttcctcgccggagtttgagatctcaacccttccctcatttctc |
31996343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 469 - 633
Target Start/End: Original strand, 31996606 - 31996770
Alignment:
| Q |
469 |
ttcgtaacttaccaatgtgaaaccggttacagagaaatcaacgaaacctagaaaaccgagcgcattattcgaagattgtggtttcaggaaaacgaaaaga |
568 |
Q |
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| T |
31996606 |
ttcgtaacttaccaatgtgaaaccggttacagagaaatcaacgaaacctagaaaaccgagcgcattattcgaagattgtggtttcaggaaaacgaaaaga |
31996705 |
T |
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| Q |
569 |
cagaaaacaaggtttagagaatttgaagagaaaccgtgtgacttcagattttatacgagacgaga |
633 |
Q |
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| T |
31996706 |
cagaaaacaaggtttagagaatttgaagagaaaccgtgtgacttcagattttatacgagacgaga |
31996770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 268 - 382
Target Start/End: Original strand, 31996408 - 31996522
Alignment:
| Q |
268 |
gataacccattcaattctcaagttcaaaaaccttaacagttacaaattacacttcacacaaaccaaattcccgtacaagatttcacatcaaacacaccat |
367 |
Q |
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| T |
31996408 |
gataacccattcaattctcaagttcaaaaaccttaacagttacaaattacacttcacacaaaccaaattcccgtacaagatttcacatcaaacacaccat |
31996507 |
T |
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| Q |
368 |
cgtcatttctgtaac |
382 |
Q |
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| T |
31996508 |
cgtcatttctgtaac |
31996522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 664 - 793
Target Start/End: Original strand, 31996801 - 31996934
Alignment:
| Q |
664 |
aggtaaatacgtggaaaatattt--attcatgatctat--gctcgagtaattctttagcatgtgtgtnnnnnnnttattaaatctttaacattactttgg |
759 |
Q |
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| T |
31996801 |
aggtaaatacgtggaaaatatttttattcatgatctatatgctcgagtaaatctttaacatttgtgtaaaaaaattattaaatctttaacattactttgg |
31996900 |
T |
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| Q |
760 |
tttgaatttaaacaataatgattatgtttagtta |
793 |
Q |
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| T |
31996901 |
tttgaatttaaacaataatgattatgtttagtta |
31996934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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