View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16808_low_22 (Length: 252)

Name: NF16808_low_22
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16808_low_22
NF16808_low_22
[»] chr4 (16 HSPs)
chr4 (10-233)||(20181026-20181248)
chr4 (10-52)||(32885683-32885725)
chr4 (10-53)||(12856178-12856221)
chr4 (10-49)||(43606158-43606197)
chr4 (10-49)||(47018004-47018043)
chr4 (10-49)||(50657878-50657917)
chr4 (10-52)||(3544490-3544532)
chr4 (10-56)||(9172429-9172475)
chr4 (10-52)||(20955493-20955535)
chr4 (10-48)||(34773741-34773779)
chr4 (10-48)||(35031382-35031420)
chr4 (10-47)||(17859778-17859815)
chr4 (10-54)||(4722522-4722566)
chr4 (10-54)||(20753183-20753227)
chr4 (10-54)||(46735027-46735071)
chr4 (10-46)||(52608625-52608661)
[»] chr1 (13 HSPs)
chr1 (10-54)||(5172660-5172704)
chr1 (10-53)||(4429540-4429583)
chr1 (10-53)||(8261733-8261776)
chr1 (10-49)||(18923943-18923982)
chr1 (10-49)||(29442025-29442064)
chr1 (10-49)||(38020006-38020045)
chr1 (11-49)||(9408673-9408711)
chr1 (10-48)||(43555932-43555970)
chr1 (10-47)||(4354163-4354200)
chr1 (10-54)||(15774370-15774414)
chr1 (10-42)||(17871137-17871169)
chr1 (10-49)||(35111647-35111687)
chr1 (10-54)||(37490883-37490927)
[»] chr8 (17 HSPs)
chr8 (10-61)||(41225723-41225774)
chr8 (10-55)||(9524949-9524994)
chr8 (17-49)||(33566957-33566989)
chr8 (10-49)||(15042423-15042462)
chr8 (10-49)||(23857382-23857421)
chr8 (10-49)||(24608541-24608580)
chr8 (10-49)||(28465616-28465655)
chr8 (10-49)||(29108660-29108699)
chr8 (10-49)||(39484428-39484467)
chr8 (10-52)||(8740714-8740756)
chr8 (12-50)||(31117424-31117462)
chr8 (10-48)||(43847701-43847739)
chr8 (10-52)||(43875035-43875077)
chr8 (10-54)||(7649522-7649566)
chr8 (10-54)||(17980275-17980319)
chr8 (10-54)||(40249938-40249982)
chr8 (17-49)||(43468770-43468802)
[»] chr6 (11 HSPs)
chr6 (10-49)||(32057032-32057071)
chr6 (10-54)||(22389808-22389852)
chr6 (10-49)||(12089095-12089134)
chr6 (10-49)||(19642605-19642644)
chr6 (10-52)||(5288403-5288445)
chr6 (11-49)||(7563635-7563673)
chr6 (10-48)||(12127967-12128005)
chr6 (10-47)||(6296966-6297003)
chr6 (10-47)||(6303776-6303813)
chr6 (10-46)||(22501019-22501055)
chr6 (10-46)||(31741521-31741557)
[»] chr2 (14 HSPs)
chr2 (10-53)||(36481063-36481106)
chr2 (10-55)||(30474253-30474298)
chr2 (10-51)||(36072628-36072669)
chr2 (10-54)||(10207638-10207682)
chr2 (10-49)||(580841-580880)
chr2 (10-49)||(20122533-20122572)
chr2 (10-53)||(38820569-38820612)
chr2 (10-48)||(22297510-22297548)
chr2 (10-56)||(36520838-36520884)
chr2 (10-54)||(8234850-8234894)
chr2 (10-54)||(9547185-9547229)
chr2 (17-49)||(15690099-15690131)
chr2 (10-50)||(26807142-26807182)
chr2 (10-54)||(36426914-36426958)
[»] chr3 (14 HSPs)
chr3 (10-56)||(33206748-33206794)
chr3 (17-57)||(42271078-42271118)
chr3 (10-49)||(49639026-49639065)
chr3 (10-48)||(33072289-33072327)
chr3 (10-44)||(34344835-34344869)
chr3 (10-48)||(34503214-34503252)
chr3 (10-48)||(40786279-40786317)
chr3 (10-51)||(335088-335129)
chr3 (10-55)||(24751318-24751363)
chr3 (10-49)||(7448421-7448461)
chr3 (10-49)||(7456563-7456603)
chr3 (10-54)||(35483262-35483306)
chr3 (10-54)||(43566854-43566898)
chr3 (10-54)||(54983767-54983811)
[»] chr7 (19 HSPs)
chr7 (10-46)||(23685612-23685648)
chr7 (10-54)||(49012391-49012435)
chr7 (10-49)||(8195913-8195952)
chr7 (10-56)||(30644160-30644206)
chr7 (10-52)||(46716328-46716370)
chr7 (10-48)||(47552212-47552250)
chr7 (10-55)||(2366349-2366394)
chr7 (10-47)||(4590664-4590701)
chr7 (10-47)||(22047520-22047557)
chr7 (10-47)||(34962030-34962067)
chr7 (10-47)||(38025341-38025378)
chr7 (12-49)||(45197316-45197353)
chr7 (10-50)||(2261542-2261582)
chr7 (10-46)||(27047773-27047809)
chr7 (10-46)||(28694244-28694280)
chr7 (17-49)||(34948104-34948136)
chr7 (10-54)||(36176864-36176908)
chr7 (10-54)||(36316032-36316076)
chr7 (10-54)||(38778737-38778781)
[»] chr5 (10 HSPs)
chr5 (10-49)||(18872519-18872558)
chr5 (10-53)||(26302551-26302594)
chr5 (10-49)||(29266066-29266105)
chr5 (10-48)||(18478002-18478040)
chr5 (10-48)||(23925542-23925580)
chr5 (10-48)||(29841347-29841385)
chr5 (10-47)||(29096366-29096403)
chr5 (17-49)||(19059069-19059101)
chr5 (10-46)||(27440356-27440392)
chr5 (10-54)||(40339157-40339201)
[»] scaffold0178 (1 HSPs)
scaffold0178 (10-48)||(4322-4360)
[»] scaffold0008 (1 HSPs)
scaffold0008 (10-47)||(43754-43791)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 20181248 - 20181026
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaacaactttgttttttaaggaaagaagtagtaccaacannnnnnnatatatgaatat 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||       ||||||||||||    
T  20181248 ataatactgcattgtcctaccaactgagctatgctcacggaacaacaacattgttttttaagggaagaagtattaccaacatttttt-atatatgaatat 20181150  T
Q  110 gaattacacaaaattgttccacannnnnnngacaaatttatctcatactatctttttctaaaattgtaagttggcaaaagtttctttttaaccgaaggtt 209  Q
    |||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20181149 gaattacacaaaattgttccacatttttttgacaaatttatcttatactatctttttctaaaattgtaagttggcaaaagtttctttttaaccgaaggtt 20181050  T
Q  210 tgggagtaggaagaaagtgttgat 233  Q
    ||||||||||||||||||||||||    
T  20181049 tgggagtaggaagaaagtgttgat 20181026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 32885725 - 32885683
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaac 52  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  32885725 ataataatgcattgtcctaccaactgagctatgctcacggaac 32885683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 12856221 - 12856178
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaaca 53  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||    
T  12856221 ataatagtgcattatcctaccaactgagctatgctcacggaaca 12856178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 43606158 - 43606197
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  43606158 ataataatgcattgtcctatcaactgagctatgttcacgg 43606197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 47018004 - 47018043
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  47018004 ataataatgcattgtcctaccaactgagctatgctcacgg 47018043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 50657917 - 50657878
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  50657917 ataataatgcattgtcctaccaactgagctatgctcacgg 50657878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 3544490 - 3544532
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaac 52  Q
    |||||| |||||||||||| ||||||||||||| |||||||||    
T  3544490 ataataatgcattgtcctaccaactgagctatgttcacggaac 3544532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 9172429 - 9172475
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaaca 56  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||||    
T  9172429 ataataatgcattgtcctaccaactgagttatgctcacgggacaaca 9172475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 20955535 - 20955493
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaac 52  Q
    |||||| | ||||||||||||||||||| ||||||||||||||    
T  20955535 ataataatacattgtcctatcaactgagttatgctcacggaac 20955493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 34773741 - 34773779
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  34773741 ataataatgcattgtcctatcaactgaactatgctcacg 34773779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 35031420 - 35031382
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  35031420 ataataatgcattgtcctaccaactgagctatgctcacg 35031382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 17859815 - 17859778
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcac 47  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  17859815 ataataatgcattgtcctaccaactgagctatgctcac 17859778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 4722522 - 4722566
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||||||||| ||||||||||||| |||||| ||||    
T  4722522 ataataatgcattgtcctaccaactgagctatgttcacgggacaa 4722566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 20753183 - 20753227
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||    
T  20753183 ataataatgcattttcctaccaactgagctatgctcacgggacaa 20753227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 46735027 - 46735071
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||| ||||||| |||||||||||||||||||| ||||    
T  46735027 ataataatgcagtgtcctaccaactgagctatgctcacgggacaa 46735071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 52608625 - 52608661
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctca 46  Q
    |||||| |||||||||||| |||||||||||||||||    
T  52608625 ataataatgcattgtcctaccaactgagctatgctca 52608661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 5172660 - 5172704
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||    
T  5172660 ataataatgcattgtcctatcaactgagctatgctcacgggacaa 5172704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 4429540 - 4429583
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaaca 53  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  4429540 ataataatgcattgtcctaccaactgagctatgctcacggaaca 4429583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 8261733 - 8261776
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaaca 53  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||    
T  8261733 ataataatgcattatcctaccaactgagctatgctcacggaaca 8261776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 18923943 - 18923982
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  18923943 ataataatgcattgtcctaccaactgagctatgctcacgg 18923982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 29442025 - 29442064
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  29442025 ataataatgcattgtcctaccaactgagctatgctcacgg 29442064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 38020006 - 38020045
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  38020006 ataataatgcattgtcctaccaactgagctatgctcacgg 38020045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 9408673 - 9408711
Alignment:
Q  11 taatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  9408673 taataatgcattgtcctaccaactgagctatgctcacgg 9408711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 43555932 - 43555970
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  43555932 ataataatgcattgtcctaccaactgagctatgctcacg 43555970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 4354163 - 4354200
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcac 47  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  4354163 ataataatgcattgtcctaccaactgagctatgctcac 4354200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 15774370 - 15774414
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||    
T  15774370 ataataatgcattgtcctaccaactgagttatgctcacgggacaa 15774414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 17871137 - 17871169
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatg 42  Q
    |||||| ||||||||||||||||||||||||||    
T  17871137 ataataatgcattgtcctatcaactgagctatg 17871169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 35111687 - 35111647
Alignment:
Q  10 ataatactgcattgt-cctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||| |||||||||||||||||||||||||    
T  35111687 ataataatgcattgttcctatcaactgagctatgctcacgg 35111647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 37490927 - 37490883
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||    
T  37490927 ataataatgcattgtcctaccaactgagttatgctcacgggacaa 37490883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 41225723 - 41225774
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaacaacttt 61  Q
    |||||| |||||||||||| |||||||||||||||||||| |||||| ||||    
T  41225723 ataataatgcattgtcctaccaactgagctatgctcacgggacaacatcttt 41225774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 9524994 - 9524949
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaac 55  Q
    |||||| |||||||||||| |||||||||||||||||||| |||||    
T  9524994 ataataatgcattgtcctaccaactgagctatgctcacgggacaac 9524949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 33566989 - 33566957
Alignment:
Q  17 tgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||||||||||||||||||||||||||||||    
T  33566989 tgcattgtcctatcaactgagctatgctcacgg 33566957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 15042423 - 15042462
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  15042423 ataataatgcattgtcctaccaactgagctatgctcacgg 15042462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 23857382 - 23857421
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  23857382 ataataatgcattgtcctaccaactgagctatgctcacgg 23857421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 24608541 - 24608580
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  24608541 ataataatgcattgtcctaccaactgagctatgctcacgg 24608580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 28465655 - 28465616
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  28465655 ataataatgcattgtcctaccaactgagctatgctcacgg 28465616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 29108699 - 29108660
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  29108699 ataataatgcattgtcctaccaactgagctatgctcacgg 29108660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 39484428 - 39484467
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  39484428 ataataatgcattgtcctaccaactgagctatgctcacgg 39484467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 8740714 - 8740756
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaac 52  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||    
T  8740714 ataatactgcattgtcctaccaactgagttatgctcgcggaac 8740756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 31117424 - 31117462
Alignment:
Q  12 aatactgcattgtcctatcaactgagctatgctcacgga 50  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  31117424 aataatgcattgttctatcaactgagctatgctcacgga 31117462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 43847739 - 43847701
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  43847739 ataataatgcattgtcctaccaactgagctatgctcacg 43847701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 43875035 - 43875077
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaac 52  Q
    |||||| ||||||||||||||||||||| |||||||| |||||    
T  43875035 ataataatgcattgtcctatcaactgagttatgctcatggaac 43875077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 7649566 - 7649522
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||||||||| ||| |||||||||||||||| ||||    
T  7649566 ataataatgcattgtcctaccaagtgagctatgctcacgggacaa 7649522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 17980319 - 17980275
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| ||| |||||||| |||||||||||||||||||| ||||    
T  17980319 ataataatgctttgtcctaccaactgagctatgctcacgggacaa 17980275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 40249938 - 40249982
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||    
T  40249938 ataataatgcattgtcctaccaactgagttatgctcacgggacaa 40249982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 43468770 - 43468802
Alignment:
Q  17 tgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||||||||| ||||||||||||||||||||    
T  43468770 tgcattgtcctaccaactgagctatgctcacgg 43468802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 32057071 - 32057032
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  32057071 ataataatgcattgtcctatcaactgagctatgctcacgg 32057032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 22389808 - 22389852
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||    
T  22389808 ataataatgcattgtcctaccaactgagctatgctcacgggacaa 22389852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 12089134 - 12089095
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  12089134 ataataatgcattgtcctaccaactgagctatgctcacgg 12089095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 19642605 - 19642644
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  19642605 ataataatgcattgtcctaccaactgagctatgctcacgg 19642644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 5288403 - 5288445
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaac 52  Q
    |||||| |||||||||||| |||||||| ||||||||||||||    
T  5288403 ataataatgcattgtcctaccaactgagttatgctcacggaac 5288445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 7563635 - 7563673
Alignment:
Q  11 taatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  7563635 taataatgcattgtcctaccaactgagctatgctcacgg 7563673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 12127967 - 12128005
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  12127967 ataataatgcattgtcctaccaactgagctatgctcacg 12128005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 6296966 - 6297003
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcac 47  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  6296966 ataataatgcattgtcctatcaaccgagctatgctcac 6297003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 6303776 - 6303813
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcac 47  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  6303776 ataataatgcattgtcctatcaaccgagctatgctcac 6303813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 22501055 - 22501019
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctca 46  Q
    |||||| |||||||||||| |||||||||||||||||    
T  22501055 ataataatgcattgtcctaccaactgagctatgctca 22501019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 31741521 - 31741557
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctca 46  Q
    |||||| |||||||||||| |||||||||||||||||    
T  31741521 ataataatgcattgtcctaccaactgagctatgctca 31741557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 36481106 - 36481063
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaaca 53  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  36481106 ataataatgcattgtcctaccaactgagctatgctcacggaaca 36481063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 30474253 - 30474298
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaac 55  Q
    |||||| |||||||||||| |||||||||||||||||||| |||||    
T  30474253 ataataatgcattgtcctaccaactgagctatgctcacgggacaac 30474298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 36072628 - 36072669
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaa 51  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  36072628 ataatattgcattgtcctaacaactgagctatgctcacggaa 36072669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 10207682 - 10207638
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||| ||||| |||||||||||||||||||||||||    
T  10207682 ataataatgcattatcctaccaactgagctatgctcacggaacaa 10207638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 580841 - 580880
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  580841 ataataatgcattgtcctaccaactgagctatgctcacgg 580880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 20122533 - 20122572
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  20122533 ataataatgcattgtcctaccaactgagctatgctcacgg 20122572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 38820612 - 38820569
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaaca 53  Q
    |||||| |||||||||||| ||||||||||||| ||||||||||    
T  38820612 ataataatgcattgtcctaacaactgagctatgttcacggaaca 38820569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 22297510 - 22297548
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  22297510 ataataatgcattgtcctaccaactgagctatgctcacg 22297548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 36520838 - 36520884
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaaca 56  Q
    |||||| |||||||||||| ||||||||||| |||||||| ||||||    
T  36520838 ataataatgcattgtcctaccaactgagctacgctcacgggacaaca 36520884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 8234850 - 8234894
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| || ||||||||| |||||||||||||||||||| ||||    
T  8234850 ataataatgtattgtcctaccaactgagctatgctcacgggacaa 8234894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 9547185 - 9547229
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| | |||||||||||||||||||||||| |||||| ||||    
T  9547185 ataataatacattgtcctatcaactgagctatgttcacgggacaa 9547229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 15690099 - 15690131
Alignment:
Q  17 tgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||||||||| ||||||||||||||||||||    
T  15690099 tgcattgtcctaccaactgagctatgctcacgg 15690131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 26807142 - 26807182
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgga 50  Q
    |||||| |||||||||||| |||||||| ||||||||||||    
T  26807142 ataataatgcattgtcctaccaactgagttatgctcacgga 26807182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 36426914 - 36426958
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||||||||| ||| |||||||||||||| ||||||    
T  36426914 ataataatgcattgtcctaccaagtgagctatgctcacagaacaa 36426958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 33206794 - 33206748
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaaca 56  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||||    
T  33206794 ataataatgcattgtcctaccaactgagctatgctcacgggacaaca 33206748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 42271078 - 42271118
Alignment:
Q  17 tgcattgtcctatcaactgagctatgctcacggaacaacaa 57  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  42271078 tgcattgtcctaccaactgagctatgctcacgggacaacaa 42271118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 49639065 - 49639026
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  49639065 ataataatgcattgtcctaccaactgagctatgctcacgg 49639026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 33072327 - 33072289
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  33072327 ataataatgcattgtcctatcaactgagttatgctcacg 33072289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 34344835 - 34344869
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgct 44  Q
    |||||| ||||||||||||||||||||||||||||    
T  34344835 ataataatgcattgtcctatcaactgagctatgct 34344869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 34503252 - 34503214
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  34503252 ataataatgcattgtcctaccaactgagctatgctcacg 34503214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 40786317 - 40786279
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  40786317 ataataatgcattgtcctaccaactgagctatgctcacg 40786279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 335088 - 335129
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaa 51  Q
    |||||| |||||||||||| ||||| ||||||||||||||||    
T  335088 ataataatgcattgtcctaccaactaagctatgctcacggaa 335129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 24751318 - 24751363
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaac 55  Q
    |||||| ||||||||||||  ||||||||||||||||||| |||||    
T  24751318 ataataatgcattgtcctactaactgagctatgctcacgggacaac 24751363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 7448421 - 7448461
Alignment:
Q  10 ataatactgcattgtcc-tatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  7448421 ataataatgcattgtccctatcaactgagctatgctcacgg 7448461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 7456563 - 7456603
Alignment:
Q  10 ataatactgcattgtcc-tatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  7456563 ataataatgcattgtccctatcaactgagctatgctcacgg 7456603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 35483306 - 35483262
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| ||||||||||||  ||||||||||||||||||| ||||    
T  35483306 ataataatgcattgtcctactaactgagctatgctcacgggacaa 35483262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 43566854 - 43566898
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||||||||| ||||||||||||| |||||| ||||    
T  43566854 ataataatgcattgtcctaccaactgagctatgttcacgggacaa 43566898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 54983767 - 54983811
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||    
T  54983767 ataataatgcattatcctaccaactgagctatgctcacgggacaa 54983811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 23685612 - 23685648
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctca 46  Q
    |||||| ||||||||||||||||||||||||||||||    
T  23685612 ataataatgcattgtcctatcaactgagctatgctca 23685648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 49012435 - 49012391
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||    
T  49012435 ataataatgcattgtcctaccaactgagctatgctcacgggacaa 49012391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 8195952 - 8195913
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  8195952 ataataatgcattgtcctaccaactgagctatgctcacgg 8195913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 30644206 - 30644160
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaaca 56  Q
    |||||| |||||||||||| |||||||||||| ||||||| ||||||    
T  30644206 ataataatgcattgtcctaccaactgagctatactcacgggacaaca 30644160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 46716370 - 46716328
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaac 52  Q
    |||||| |||||||||||| ||||||||||||||||| |||||    
T  46716370 ataataatgcattgtcctaccaactgagctatgctcatggaac 46716328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 47552250 - 47552212
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  47552250 ataataatgcattgtcctaccaactgagctatgctcacg 47552212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 2366394 - 2366349
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaac 55  Q
    |||||| ||||||||||||||||||||| ||| ||||||| |||||    
T  2366394 ataataatgcattgtcctatcaactgagttatactcacgggacaac 2366349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 4590664 - 4590701
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcac 47  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  4590664 ataataatgcattgtcctaccaactgagctatgctcac 4590701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 22047557 - 22047520
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcac 47  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  22047557 ataataatgcattgtcctaccaactgagctatgctcac 22047520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 34962030 - 34962067
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcac 47  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  34962030 ataataatgcattgtcctaccaactgagctatgctcac 34962067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 38025378 - 38025341
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcac 47  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  38025378 ataataatgcattgtcctatcaaatgagctatgctcac 38025341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 45197353 - 45197316
Alignment:
Q  12 aatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  45197353 aataatgcattgtcctaccaactgagctatgctcacgg 45197316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 2261542 - 2261582
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgga 50  Q
    |||||| |||||||||||| ||| |||||||||||||||||    
T  2261542 ataataatgcattgtcctaccaattgagctatgctcacgga 2261582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 27047773 - 27047809
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctca 46  Q
    |||||| |||||||||||| |||||||||||||||||    
T  27047773 ataataatgcattgtcctaccaactgagctatgctca 27047809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 28694244 - 28694280
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctca 46  Q
    |||||| |||| |||||||||||||||||||||||||    
T  28694244 ataataatgcactgtcctatcaactgagctatgctca 28694280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 34948136 - 34948104
Alignment:
Q  17 tgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||||||||| ||||||||||||||||||||    
T  34948136 tgcattgtcctaccaactgagctatgctcacgg 34948104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 36176908 - 36176864
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||||||||| ||||||||||||| ||| |||||||    
T  36176908 ataataatgcattgtcctaccaactgagctatgttcatggaacaa 36176864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 36316032 - 36316076
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||    
T  36316032 ataataatgcattatcctaccaactgagctatgctcacgggacaa 36316076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 38778737 - 38778781
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||    
T  38778737 ataataatgcattgtcctaccaactgagatatgctcacgggacaa 38778781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 18872558 - 18872519
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  18872558 ataataatgcattgtcctaccaactgagctatgctcacgg 18872519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 26302551 - 26302594
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaaca 53  Q
    |||||| |||||||||||| |||| |||||||||||||||||||    
T  26302551 ataataatgcattgtcctaccaaccgagctatgctcacggaaca 26302594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 29266105 - 29266066
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  29266105 ataataatgcattgtcctatcaattgagctatgctcacgg 29266066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 18478040 - 18478002
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  18478040 ataataatgcattgtcctaccaactgagctatgctcacg 18478002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 23925580 - 23925542
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  23925580 ataataatgcattgtcctatcaactgagttatgctcacg 23925542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 29841385 - 29841347
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  29841385 ataataatgcattgtcctaccaactgagctatgctcacg 29841347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 29096366 - 29096403
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcac 47  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  29096366 ataataatgcattgtcctaccaactgagctatgctcac 29096403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 19059069 - 19059101
Alignment:
Q  17 tgcattgtcctatcaactgagctatgctcacgg 49  Q
    |||||||||||| ||||||||||||||||||||    
T  19059069 tgcattgtcctaccaactgagctatgctcacgg 19059101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 27440356 - 27440392
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctca 46  Q
    |||||| |||||||||||| |||||||||||||||||    
T  27440356 ataataatgcattgtcctaccaactgagctatgctca 27440392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 40339157 - 40339201
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacggaacaa 54  Q
    |||||| ||||||||||||  ||||||||||||||||||| ||||    
T  40339157 ataataatgcattgtcctactaactgagctatgctcacgggacaa 40339201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 4360 - 4322
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcacg 48  Q
    |||||| || |||||||||||||||||||||||||||||    
T  4360 ataataatgtattgtcctatcaactgagctatgctcacg 4322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 43754 - 43791
Alignment:
Q  10 ataatactgcattgtcctatcaactgagctatgctcac 47  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  43754 ataataatgcattgtcctaccaactgagctatgctcac 43791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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