View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_low_23 (Length: 250)
Name: NF16808_low_23
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 29250003 - 29250222
Alignment:
| Q |
20 |
ccaactacgttggacatttgaactaactcatgagcaacagcaa-tcttggataattggatcaaatacagccattatagccttgacattgatacaatccac |
118 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
29250003 |
ccaactatgttggacatttgaactaactcatgagcaacagcaaatcttggataattggatcaactgcagccattatagccttgacattgatacaatccac |
29250102 |
T |
|
| Q |
119 |
aacagcagctgcattggactccaccaccaccttgtttaaacacaaatattttgcaactgagagacaccatctcaaaccaagtgcctccgccaacatagga |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29250103 |
aacagcagctgcattgaactccaccaccaccttgtttaaacacaaatattttgcaactgagagacaccatctcaaaccaagtgcctccgccaacatagga |
29250202 |
T |
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| Q |
219 |
ctcaaatccacttcttctct |
238 |
Q |
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|||||||||||||||||||| |
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| T |
29250203 |
ctcaaatccacttcttctct |
29250222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 31438910 - 31438727
Alignment:
| Q |
55 |
aacagcaatcttggataattggatcaaatacagccattatagccttgacattgatacaatccacaacagcagctgcattggactccaccaccaccttgtt |
154 |
Q |
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|||| |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||||||| || |
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| T |
31438910 |
aacaacaatcttggataattggatcaattgcagccattatagccttgccattgatacaatccacaacagtagcagcatcagactccaccaccaccttatt |
31438811 |
T |
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| Q |
155 |
taaacacaaatattttgcaactgagagacaccatctcaaaccaagtgcctccgccaacataggactcaaatccacttcttctct |
238 |
Q |
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| T |
31438810 |
taatcgcaaatcttttgcaactgagagacaccacctcaaaccaagtgcctctgtcaacataggactcaactccacttcttctct |
31438727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 31197081 - 31196901
Alignment:
| Q |
58 |
agcaatcttggataattggatcaaatacagccattatagccttgacattgatacaatccacaacagcagctgcattggactccaccaccaccttgtttaa |
157 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
31197081 |
agcaatcttggataattggatcaattgcagccattatagccttgccattgatacaatccacaacagtagcatcatcggactccaccaccaccttgtttaa |
31196982 |
T |
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| Q |
158 |
acacaaatattttgcaactgagagacaccatctcaaaccaagtgcctccgccaacataggactcaaatccacttcttctct |
238 |
Q |
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| ||| | |||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
31196981 |
aggcaagtcttttgcaactaagagacaccatctcaaaccaagtgcctttgccaacataagactcaactccacttcttctct |
31196901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 31439007 - 31438969
Alignment:
| Q |
20 |
ccaactacgttggacatttgaactaactcatgagcaaca |
58 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
31439007 |
ccaactactttggacatttgaactaactcatgagcaaca |
31438969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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