View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_low_28 (Length: 227)
Name: NF16808_low_28
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 33637132 - 33637215
Alignment:
| Q |
129 |
ttcttttggagacctaaagccataatgcatttgtgttggtctgtaaagaaatccaaaatttgccaagatttaacttgctttctc |
212 |
Q |
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| T |
33637132 |
ttcttttggagacctaaagccataatgcatttgtgttggtctgtaaagaaatccaaaattttccaagatttaacttgctttctc |
33637215 |
T |
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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33637004 - 33637098
Alignment:
| Q |
1 |
aaaacataaaatttctctataatttcatcattaaattttacgatcaaaaaatttggtggttctgagctgttttgaatccatgtaagtccttattt |
95 |
Q |
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| T |
33637004 |
aaaacataaaatttctctataatttcatcattaaattttacgatcaagaaatttggtggttcaaagctgttttgaaaccatgtaagaccttattt |
33637098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 25777213 - 25777173
Alignment:
| Q |
15 |
ctctataatttcatcattaaattttacgatcaaaaaatttg |
55 |
Q |
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| T |
25777213 |
ctctctaatttcatcactaaattttacgatcaaaaaatttg |
25777173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26415448 - 26415502
Alignment:
| Q |
1 |
aaaacataaaatttctctataatttcatcattaaattttacgatcaaaaaatttg |
55 |
Q |
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| T |
26415448 |
aaaacgtaaaatccctctttaatttcgtcactaaattttacgatcaaaaaatttg |
26415502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 4627187 - 4627139
Alignment:
| Q |
7 |
taaaatttctctataatttcatcattaaattttacgatcaaaaaatttg |
55 |
Q |
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| T |
4627187 |
taaaatctctctctaatttcgtcactaaattttacgatcaagaaatttg |
4627139 |
T |
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