View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16808_low_3 (Length: 656)

Name: NF16808_low_3
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16808_low_3
NF16808_low_3
[»] chr7 (27 HSPs)
chr7 (276-645)||(38917072-38917432)
chr7 (19-221)||(38917487-38917704)
chr7 (545-622)||(26199509-26199587)
chr7 (543-624)||(43215182-43215264)
chr7 (545-622)||(22760863-22760941)
chr7 (530-622)||(39499703-39499795)
chr7 (543-622)||(26459406-26459486)
chr7 (530-617)||(41519247-41519335)
chr7 (548-622)||(24513797-24513872)
chr7 (542-623)||(17041007-17041089)
chr7 (545-622)||(20335829-20335907)
chr7 (527-623)||(23552117-23552215)
chr7 (545-616)||(21877814-21877886)
chr7 (544-622)||(23301599-23301678)
chr7 (530-623)||(23945860-23945955)
chr7 (531-581)||(7309398-7309448)
chr7 (582-616)||(42477104-42477138)
chr7 (545-605)||(7499922-7499983)
chr7 (550-622)||(7801180-7801253)
chr7 (543-623)||(14058252-14058333)
chr7 (543-623)||(14368280-14368361)
chr7 (583-624)||(24621813-24621854)
chr7 (543-623)||(45709704-45709785)
chr7 (543-623)||(13106778-13106858)
chr7 (543-622)||(33869441-33869521)
chr7 (531-601)||(45229008-45229080)
chr7 (321-365)||(47813416-47813460)
[»] chr5 (14 HSPs)
chr5 (543-622)||(16773807-16773887)
chr5 (543-623)||(26078047-26078128)
chr5 (547-623)||(30109308-30109385)
chr5 (532-623)||(30883182-30883275)
chr5 (543-623)||(34984805-34984886)
chr5 (544-623)||(43241679-43241759)
chr5 (532-623)||(16436617-16436708)
chr5 (553-623)||(40461619-40461690)
chr5 (552-602)||(19949621-19949671)
chr5 (585-622)||(3252328-3252365)
chr5 (543-622)||(14495801-14495881)
chr5 (543-622)||(21549133-21549213)
chr5 (543-622)||(25627057-25627137)
chr5 (545-581)||(35360084-35360120)
[»] chr3 (24 HSPs)
chr3 (530-622)||(14186648-14186741)
chr3 (545-621)||(47454615-47454692)
chr3 (545-624)||(5499405-5499485)
chr3 (543-622)||(37788461-37788541)
chr3 (545-623)||(8368797-8368876)
chr3 (530-623)||(36720380-36720475)
chr3 (544-623)||(19154630-19154710)
chr3 (530-581)||(52769965-52770017)
chr3 (544-622)||(2597217-2597296)
chr3 (530-623)||(32651420-32651514)
chr3 (543-624)||(10499105-10499187)
chr3 (543-611)||(4844507-4844576)
chr3 (543-611)||(4870203-4870272)
chr3 (547-623)||(8051213-8051290)
chr3 (543-622)||(10445135-10445216)
chr3 (568-620)||(10682964-10683017)
chr3 (542-602)||(21960571-21960632)
chr3 (594-623)||(24481580-24481609)
chr3 (543-619)||(53412948-53413025)
chr3 (548-611)||(12761523-12761587)
chr3 (543-622)||(16354888-16354968)
chr3 (543-622)||(28703400-28703480)
chr3 (543-602)||(29563920-29563980)
chr3 (591-623)||(34622567-34622599)
[»] chr2 (22 HSPs)
chr2 (544-623)||(35710390-35710470)
chr2 (543-625)||(3001376-3001459)
chr2 (547-622)||(12994376-12994452)
chr2 (543-622)||(19244109-19244189)
chr2 (543-623)||(4060210-4060291)
chr2 (531-623)||(29503270-29503363)
chr2 (543-622)||(40416386-40416466)
chr2 (545-623)||(37480074-37480153)
chr2 (545-623)||(39714991-39715070)
chr2 (544-622)||(42327392-42327471)
chr2 (530-582)||(33582014-33582067)
chr2 (586-622)||(5147719-5147755)
chr2 (547-622)||(42860348-42860424)
chr2 (545-611)||(21213780-21213847)
chr2 (548-622)||(28846691-28846766)
chr2 (543-623)||(19322767-19322848)
chr2 (547-623)||(34041588-34041665)
chr2 (543-622)||(13803495-13803575)
chr2 (544-623)||(30808644-30808724)
chr2 (586-622)||(35916086-35916122)
chr2 (548-623)||(38854463-38854539)
chr2 (528-567)||(39764989-39765029)
[»] chr8 (10 HSPs)
chr8 (530-620)||(3624582-3624673)
chr8 (543-622)||(968362-968442)
chr8 (533-623)||(19703472-19703564)
chr8 (545-623)||(16852339-16852418)
chr8 (543-622)||(18540298-18540378)
chr8 (543-623)||(8484998-8485079)
chr8 (568-624)||(17727447-17727504)
chr8 (545-611)||(18546360-18546427)
chr8 (548-625)||(34966851-34966929)
chr8 (543-623)||(35641897-35641978)
[»] chr6 (15 HSPs)
chr6 (543-624)||(33549102-33549184)
chr6 (530-611)||(3715463-3715546)
chr6 (545-602)||(346551-346608)
chr6 (530-623)||(12234489-12234584)
chr6 (532-622)||(14557962-14558053)
chr6 (543-619)||(4105051-4105131)
chr6 (588-622)||(22995153-22995187)
chr6 (588-622)||(23793213-23793247)
chr6 (549-622)||(32439805-32439879)
chr6 (543-623)||(12188299-12188380)
chr6 (543-602)||(6385882-6385942)
chr6 (532-622)||(11423566-11423658)
chr6 (588-620)||(22995077-22995109)
chr6 (588-620)||(23793291-23793323)
chr6 (545-616)||(34444809-34444881)
[»] scaffold0258 (1 HSPs)
scaffold0258 (543-622)||(15319-15399)
[»] chr1 (24 HSPs)
chr1 (543-618)||(9224779-9224855)
chr1 (543-618)||(14787332-14787408)
chr1 (543-625)||(51814491-51814574)
chr1 (531-622)||(2219972-2220065)
chr1 (545-624)||(25297770-25297850)
chr1 (282-349)||(16138143-16138210)
chr1 (530-618)||(17745238-17745328)
chr1 (530-622)||(50901581-50901675)
chr1 (582-623)||(34460945-34460986)
chr1 (282-349)||(16127053-16127120)
chr1 (285-352)||(33731163-33731230)
chr1 (572-622)||(38978967-38979018)
chr1 (545-622)||(19528325-19528403)
chr1 (552-625)||(29817672-29817746)
chr1 (546-623)||(40257398-40257476)
chr1 (543-604)||(50919972-50920034)
chr1 (545-602)||(52029935-52029993)
chr1 (543-623)||(8177178-8177259)
chr1 (531-622)||(11068826-11068919)
chr1 (543-623)||(36371469-36371550)
chr1 (543-622)||(9165191-9165271)
chr1 (544-619)||(15786317-15786393)
chr1 (543-602)||(28411350-28411410)
chr1 (532-622)||(44961765-44961857)
[»] chr4 (19 HSPs)
chr4 (530-622)||(47044717-47044810)
chr4 (543-622)||(37109347-37109427)
chr4 (530-623)||(21660126-21660221)
chr4 (530-623)||(21668890-21668985)
chr4 (530-622)||(46545711-46545805)
chr4 (546-618)||(13901746-13901819)
chr4 (545-601)||(19112929-19112986)
chr4 (543-619)||(52254400-52254477)
chr4 (544-622)||(3780657-3780736)
chr4 (530-623)||(7949436-7949531)
chr4 (544-618)||(43623441-43623516)
chr4 (543-615)||(306306-306379)
chr4 (543-619)||(7292794-7292871)
chr4 (545-622)||(19229206-19229283)
chr4 (530-582)||(47386773-47386826)
chr4 (531-622)||(51948480-51948573)
chr4 (543-622)||(1730485-1730565)
chr4 (532-622)||(8306485-8306577)
chr4 (544-611)||(30557267-30557335)
[»] scaffold0118 (1 HSPs)
scaffold0118 (543-622)||(41629-41709)
[»] scaffold0211 (1 HSPs)
scaffold0211 (543-622)||(24053-24133)
[»] scaffold0006 (1 HSPs)
scaffold0006 (530-611)||(162991-163074)
[»] scaffold0008 (1 HSPs)
scaffold0008 (531-582)||(49347-49399)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 276 - 645
Target Start/End: Complemental strand, 38917432 - 38917072
Alignment:
Q  276 ggcagccttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgcaatagttgaccatctgcatcatcatt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38917432 ggcagccttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgcaatagttgaccatctgcatcatcatt 38917333  T
Q  376 aaaccattaaataaatgtttgcacaacaaaatcatgctctatattcatgcttgattttgtaatattcattaactaagttaaccaaaattagacnnnnnnn 475  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||           
T  38917332 aaaccattaaataaatatttgcacaacaaaatcatgctctatattcatgcttgattttgtaatattcat---------taaccaaaattagacaaaaaaa 38917242  T
Q  476 catttttattttacataagtttctttcacccgacctaatannnnnnngaataagctaaattgacactgagagaatcgaacctgagacctcaaagagaagc 575  Q
    |||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||| |||||||||| |||||| |||| |||||||    
T  38917241 catttttattttacataagtttctttcatccgacctaatatttttttgaataagctaaattgacactgaaagaatcgaacttgagacttcaaggagaagc 38917142  T
Q  576 acactctaggtctcaagtcaataccactagaccaactcaagtgggttttacctgacctaatattcttgga 645  Q
    ||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  38917141 acattctaagtctcaagttaataccactagaccaactcaagtgggtttcacctgacctaatattattgga 38917072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 38917704 - 38917487
Alignment:
Q  19 catccaatgcaaaattattttctgccgaatcaacagcatcatgattattgttg---ttgttg------------atatcattatcattatttgaagtagc 103  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||   || |||            ||||||||||||||||||||||||||    
T  38917704 catccaatgcaaaattattttctgccgaatcaacaacatcattattattgttgatattattgtaacttatagatatatcattatcattatttgaagtagc 38917605  T
Q  104 aatgctactattattatgtgatgacatgtcactagaacactgtggcctatcatcctcatgatgttgttcttgtttggtgtcttggtctgatttggaggcg 203  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38917604 aatgctactattattatgtgatgacatgtcactagaacattgtggcctatcatcctcatgatgttgttcttgtttggtgtcttggtctgatttggaggcg 38917505  T
Q  204 tcgacatgaaagtccaac 221  Q
    ||||||||||||||||||    
T  38917504 tcgacatgaaagtccaac 38917487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 545 - 622
Target Start/End: Complemental strand, 26199587 - 26199509
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||| ||||||||| || ||| ||| ||||| |||| |||||||||||| ||||||||||||||||    
T  26199587 gagaatcgaacctgagatctcaaagaggagtacattctcaggtcccaagccaataccactaggccaactcaagtgggtt 26199509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 43215264 - 43215182
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 624  Q
    ||||||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||||||||| ||||||||||||    
T  43215264 gagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggtttt 43215182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 545 - 622
Target Start/End: Complemental strand, 22760941 - 22760863
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||  | ||| |||||||||  ||||| |||||||||||||| |||||||| ||||||||||    
T  22760941 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 622
Target Start/End: Original strand, 39499703 - 39499795
Alignment:
Q  530 ctaaattgacactgagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||||| || |||||||||| |||||||| |||||| | |||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  39499703 ctaaattgacac-gaaagaatcgaacatgagaccttaaagaggaacacactcacaggtcccaagccaataccactaggccaacccaagtgggtt 39499795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 26459406 - 26459486
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  26459406 gagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 617
Target Start/End: Original strand, 41519247 - 41519335
Alignment:
Q  530 ctaaattgacactgagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagt 617  Q
    |||||||||||| ||||||| ||||||||||||||  | ||| |||||||| |||  || ||||||||||||||||| ||||| |||||    
T  41519247 ctaaattgacacagagagaagcgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaataccactaggccaacccaagt 41519335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 548 - 622
Target Start/End: Complemental strand, 24513872 - 24513797
Alignment:
Q  548 aatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||||||||||||| |||||| ||||| | |  ||||||| |||||||||||| ||||| ||||||||||    
T  24513872 aatcgaacctgagacctcaaggagaagtacactcccaaatctcaagccaataccactaggccaacccaagtgggtt 24513797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 623
Target Start/End: Original strand, 17041007 - 17041089
Alignment:
Q  542 tgagagaatcgaacctgagacctcaaagagaagcacac-tctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    |||||||||||||||||||||||  | ||| ||||||| || || || |||| |||| ||||||||||||| |||||||||||    
T  17041007 tgagagaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaatgccactagaccaacccaagtgggttt 17041089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 622
Target Start/End: Original strand, 20335829 - 20335907
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||| | ||| |||||||| | | ||| |||| ||||||| |||||||||| ||||||||||    
T  20335829 gagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctctagaccaacccaagtgggtt 20335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 623
Target Start/End: Complemental strand, 23552215 - 23552117
Alignment:
Q  527 aagctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||| || | ||||||||||||| ||||||||  | ||| |||||||||  ||||| |||||||||| |||||| ||||| |||||||||||    
T  23552215 aagctaaattggcattagagagaatcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggttt 23552117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 545 - 616
Target Start/End: Complemental strand, 21877886 - 21877814
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaag 616  Q
    ||||||||||| |||||||| || ||| ||||| |||  ||||| ||||||||||||||||| ||||||||||    
T  21877886 gagaatcgaacgtgagaccttaaggaggagcaccctcccaggtcccaagtcaataccactaggccaactcaag 21877814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 622
Target Start/End: Original strand, 23301599 - 23301678
Alignment:
Q  544 agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||| ||| ||||||||||| ||| |||||||| | | ||| |||||||||||||| || ||||| ||||||||||    
T  23301599 agagaatcaaacttgagacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggtt 23301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 623
Target Start/End: Complemental strand, 23945955 - 23945860
Alignment:
Q  530 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||| | ||||| ||||||||||||||||||| ||| |||||| ||| ||||   |||||||||||| |||  |||| |||||||||||    
T  23945955 ctaaattgacattagagaggatcgaacctgagacctcaatgaggagcacattctcaggttctaagtcaataccattaggtcaacccaagtgggttt 23945860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 531 - 581
Target Start/End: Complemental strand, 7309448 - 7309398
Alignment:
Q  531 taaattgacactgagagaatcgaacctgagacctcaaagagaagcacactc 581  Q
    ||||||||||| ||||||||||||| ||||||||| | ||| |||||||||    
T  7309448 taaattgacacggagagaatcgaacttgagacctcgaggaggagcacactc 7309398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 616
Target Start/End: Original strand, 42477104 - 42477138
Alignment:
Q  582 taggtctcaagtcaataccactagaccaactcaag 616  Q
    |||||||||||||||||||||||||||||| ||||    
T  42477104 taggtctcaagtcaataccactagaccaacccaag 42477138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 605
Target Start/End: Original strand, 7499922 - 7499983
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactag 605  Q
    ||||||||||||||||||||| ||||| |||| ||||| ||||| |||| ||||| ||||||    
T  7499922 gagaatcgaacctgagacctcgaagaggagcaaactctcaggtcccaagccaatatcactag 7499983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 622
Target Start/End: Complemental strand, 7801253 - 7801180
Alignment:
Q  550 tcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||||||||  ||||| |||||||||  ||||| |||||||||||||| || ||||  ||||||||||    
T  7801253 tcgaacctgagaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 623
Target Start/End: Complemental strand, 14058333 - 14058252
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||||||||  | ||  |||||||||| ||||  |||| ||||||||| || |||||||||| ||||||    
T  14058333 gagagaatcgaacctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggccaactcaagcgggttt 14058252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 623
Target Start/End: Complemental strand, 14368361 - 14368280
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||||||||  | ||  |||||||||| ||||  |||| ||||||||| || |||||||||| ||||||    
T  14368361 gagagaatcgaacctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggccaactcaagcgggttt 14368280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 624
Target Start/End: Complemental strand, 24621854 - 24621813
Alignment:
Q  583 aggtctcaagtcaataccactagaccaactcaagtgggtttt 624  Q
    |||||||||||||||| ||||| |||||||||| ||||||||    
T  24621854 aggtctcaagtcaatatcactaaaccaactcaaatgggtttt 24621813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 623
Target Start/End: Original strand, 45709704 - 45709785
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    |||| |||||||||||||||||| | ||| |||||||||| || || ||||  ||||||||||| ||||| ||| |||||||    
T  45709704 gagataatcgaacctgagacctcgaggaggagcacactctcagatcccaagctaataccactaggccaacccaaatgggttt 45709785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 623
Target Start/End: Original strand, 13106778 - 13106858
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||||||||  | ||| || |||||| || || ||| ||||||| |||||| |||| ||| |||||||    
T  13106778 gagagaatcgaacctgagaccttgaggaggagtacactccagatcccaaatcaatactactagatcaacccaactgggttt 13106858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 33869441 - 33869521
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacac-tctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||||||| |||||||  |  || ||||||| || |||||||||| |||||| ||||| ||||| ||||||||||    
T  33869441 gagagaatcgaaccagagaccttgagaaggagcacacttccaggtctcaagccaatactactaggccaacccaagtgggtt 33869521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 531 - 601
Target Start/End: Original strand, 45229008 - 45229080
Alignment:
Q  531 taaattgacactg-agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaatacca 601  Q
    ||||||||||||| |||||||||||||| | |||||||  ||||||||||| ||||||| |||  ||||||||    
T  45229008 taaattgacactggagagaatcgaacctaaaacctcaagaagaagcacactcctaggtcccaaaccaatacca 45229080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 47813460 - 47813416
Alignment:
Q  321 ttatctgttcgtccgggtaatcttgctgcaatagttgaccatctg 365  Q
    |||||||||||||| ||||||||||||||||| |  |||||||||    
T  47813460 ttatctgttcgtcctggtaatcttgctgcaattgcagaccatctg 47813416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 543 - 622
Target Start/End: Complemental strand, 16773887 - 16773807
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||||| | ||| |||||||||  ||||| |||||||||||||| |||||||||||||||||||    
T  16773887 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 623
Target Start/End: Original strand, 26078047 - 26078128
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||||||||  |||||||||| ||| | | ||| |||  |||||||||||| ||||| |||||||||||    
T  26078047 gagagaatcgaacctgagaccttgaagagaagcatactcccaagtcccaaaccaataccactaggccaacccaagtgggttt 26078128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 623
Target Start/End: Original strand, 30109308 - 30109385
Alignment:
Q  547 gaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||||||| ||| |||||||| | ||||| |||| ||||||||| |  ||||| |||||||||||    
T  30109308 gaatcgaacctgagacctcaaggaggagcacactcccaggtcacaagccaataccaccaagccaacccaagtgggttt 30109385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 623
Target Start/End: Original strand, 30883182 - 30883275
Alignment:
Q  532 aaattgacactga-gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||  |||||| |||| ||||||||  | ||| |||||||||  ||||| |||| |||||||||||||||||| |||||||||||    
T  30883182 aaattgacactggtgagaattgaacttgagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggttt 30883275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 623
Target Start/End: Complemental strand, 34984886 - 34984805
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||| ||||||  | ||| |||||||||  ||||  |||| |||||||||||||||||| |||||||||||    
T  34984886 gagagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgggttt 34984805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 623
Target Start/End: Original strand, 43241679 - 43241759
Alignment:
Q  544 agagaatcgaacctgagacctcaaagagaagcacactctagg-tctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||| |||||||||||||||| ||   |||||||| | | || ||||||||||||||||||||||| |||||| ||||    
T  43241679 agagaattgaacctgagacctcaaggaagggcacactccaagatcccaagtcaataccactagaccaacccaagtgagttt 43241759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 623
Target Start/End: Complemental strand, 16436708 - 16436617
Alignment:
Q  532 aaattgacactgagagaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||| |||| || |||||||| ||||||||  | ||| ||||||||| | ||| |||| |||||||||||| ||||| |||||| ||||    
T  16436708 aaattgatactgtgaaaatcgaacatgagaccttgaggaggagcacactccaagtcccaagccaataccactaggccaacccaagtgagttt 16436617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 553 - 623
Target Start/End: Original strand, 40461619 - 40461690
Alignment:
Q  553 aacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||  | |||||||||||||| | ||||||||| |||||||| ||| |||| |||||||||||    
T  40461619 aacctgagaccttgaggagaagcacactctcaagtctcaagttaataccaccagatcaacccaagtgggttt 40461690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 602
Target Start/End: Original strand, 19949621 - 19949671
Alignment:
Q  552 gaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccac 602  Q
    |||||||||| ||| | ||| |||||||||||| |||||||||||||||||    
T  19949621 gaacctgagagctcgaggaggagcacactctagatctcaagtcaataccac 19949671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 622
Target Start/End: Original strand, 3252328 - 3252365
Alignment:
Q  585 gtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  3252328 gtctcaagtcaataccactaggccaacccaagtgggtt 3252365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 14495801 - 14495881
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||| || |||||||||| | ||| |||||||||  || || |||||||||||||| |||||||| ||| ||||||    
T  14495801 gagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggtt 14495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 21549133 - 21549213
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||| |||||||| |||||| | || ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  21549133 gagaaaatcgaacttgagactttaaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 622
Target Start/End: Complemental strand, 25627137 - 25627057
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||||  | ||| |||||||||  | ||  |||| |||||||||||| ||||| ||||||||||    
T  25627137 gagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 581
Target Start/End: Original strand, 35360084 - 35360120
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactc 581  Q
    ||||||||||||||||||||| | |||||||||||||    
T  35360084 gagaatcgaacctgagacctcgaggagaagcacactc 35360120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 530 - 622
Target Start/End: Complemental strand, 14186741 - 14186648
Alignment:
Q  530 ctaaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||||| | |||||||||||||||||||||  | ||| ||||||||| ||||| |||| |||||||||||| ||||| ||||||||||    
T  14186741 ctaaattgacaccggagagaatcgaacctgagaccttgaggaggagcacactccaggtcccaagacaataccactaggccaacccaagtgggtt 14186648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 621
Target Start/End: Original strand, 47454615 - 47454692
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggt 621  Q
    ||||||||||||||||||||| | ||| |||||||| | || ||||||| ||||||||||||| |||| |||||||||    
T  47454615 gagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaataccactagaacaacccaagtgggt 47454692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 624
Target Start/End: Original strand, 5499405 - 5499485
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 624  Q
    |||||| |||||| |||||| || ||| |||||||||| || ||||||||||||||||| || ||||| ||||||||||||    
T  5499405 gagaatagaaccttagaccttaaggaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgggtttt 5499485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 37788461 - 37788541
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||||  | ||| |||||||| ||||||  ||||||||||||||| | ||||| ||||||||||    
T  37788461 gagagaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaataccactgggccaacccaagtgggtt 37788541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 545 - 623
Target Start/End: Original strand, 8368797 - 8368876
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||| ||||||||||||| | ||  |||||||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  8368797 gagaatcaaacctgagacctcgaggatgagcacactaccaggtttcaagtcaataccactaggccaactcaattgggttt 8368876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 623
Target Start/End: Complemental strand, 36720475 - 36720380
Alignment:
Q  530 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||| ||||||||||||||||| ||||| | ||| |||||||||  |  || |||| ||||||||| |||||||| |||||||||||    
T  36720475 ctaaattgacactagagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaataccaccagaccaacccaagtgggttt 36720380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 623
Target Start/End: Complemental strand, 19154710 - 19154630
Alignment:
Q  544 agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    |||||||||||||||||||||  | ||| |||||||||| ||| |||||| |||||| ||||| ||||| ||| |||||||    
T  19154710 agagaatcgaacctgagacctttaggaggagcacactctcaggcctcaagccaatacaactaggccaacccaaatgggttt 19154630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 52769965 - 52770017
Alignment:
Q  530 ctaaattgacactga-gagaatcgaacctgagacctcaaagagaagcacactc 581  Q
    ||||||||||||| | ||||||||||||||||||||||| ||| |||||||||    
T  52769965 ctaaattgacactaaagagaatcgaacctgagacctcaaggaggagcacactc 52770017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 622
Target Start/End: Original strand, 2597217 - 2597296
Alignment:
Q  544 agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||| |||||||||||||||||| ||| |||||||| |||  ||  ||| ||||||||| |||||||| ||||||||||    
T  2597217 agagattcgaacctgagacctcaaggaggagcacactcctaaatccgaagccaataccaccagaccaacccaagtgggtt 2597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 623
Target Start/End: Original strand, 32651420 - 32651514
Alignment:
Q  530 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||| |||||||||||| |||||| ||  | ||| |||||||||  ||||| |||| |||||||||||| |||||| ||||||||||    
T  32651420 ctaaattgacactagagagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaataccactaggccaact-aagtgggttt 32651514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 624
Target Start/End: Original strand, 10499105 - 10499187
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtttt 624  Q
    ||||||||||||||||||||||||| ||  |||| ||| | || || |||| ||||||||| || ||||| ||||||||||||    
T  10499105 gagagaatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaataccaccaggccaacccaagtgggtttt 10499187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 611
Target Start/End: Original strand, 4844507 - 4844576
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaac 611  Q
    ||||||||||| ||||||||||| | ||| |||||||| | || || |||||||||||||| ||||||||    
T  4844507 gagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaac 4844576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 611
Target Start/End: Original strand, 4870203 - 4870272
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaac 611  Q
    ||||||||||| ||||||||||| | ||| |||||||| | || || |||||||||||||| ||||||||    
T  4870203 gagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaac 4870272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 623
Target Start/End: Complemental strand, 8051290 - 8051213
Alignment:
Q  547 gaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||| ||||||||| | |||||||| ||| | ||||| |||| ||||||||| || ||||| |||||||||||    
T  8051290 gaatcgaacttgagacctcgaggagaagcatactgccaggtcccaagccaataccaccaggccaacccaagtgggttt 8051213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 10445135 - 10445216
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaa-taccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||||| | ||| |||||||| | ||||| |||| ||| | ||||||| ||||| ||||||||||    
T  10445135 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaattgccactaggccaacccaagtgggtt 10445216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 620
Target Start/End: Original strand, 10682964 - 10683017
Alignment:
Q  568 agagaagcacactcta-ggtctcaagtcaataccactagaccaactcaagtggg 620  Q
    |||||||||||||| | ||||||||| ||||||||||||| |||| ||||||||    
T  10682964 agagaagcacactccaaggtctcaagccaataccactagatcaacccaagtggg 10683017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 602
Target Start/End: Complemental strand, 21960632 - 21960571
Alignment:
Q  542 tgagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccac 602  Q
    ||||||||||||| |||||||||| | ||| |||||||||| ||||| |||| |||||||||    
T  21960632 tgagagaatcgaatctgagacctcgaggaggagcacactctcaggtcccaagccaataccac 21960571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 623
Target Start/End: Complemental strand, 24481609 - 24481580
Alignment:
Q  594 caataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||||||||||||||||    
T  24481609 caataccactagaccaactcaagtgggttt 24481580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 619
Target Start/End: Complemental strand, 53413025 - 53412948
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgg 619  Q
    |||||||| |||||||||||||  | ||| |||||||||  ||||  |||| |||||||||||||||||| |||||||    
T  53413025 gagagaattgaacctgagaccttgaggaggagcacactcccaggttacaagccaataccactagaccaacccaagtgg 53412948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 611
Target Start/End: Complemental strand, 12761587 - 12761523
Alignment:
Q  548 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaac 611  Q
    |||||||||||||| ||||| ||| | |||||||  ||||| |||||||||||||| ||||||||    
T  12761587 aatcgaacctgagagctcaaggaggaacacactcccaggtcccaagtcaataccaccagaccaac 12761523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 16354888 - 16354968
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||||||||||||||   | ||| |||||||||  ||||  |||| |||||||||||| ||||| ||||||||||    
T  16354888 gagagaatcgaacctgagaccctgaggaggagcacactcacaggttccaagccaataccactaggccaacccaagtgggtt 16354968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 28703400 - 28703480
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||||  ||||| |||||||| | || || ||||  |||| |||| ||||||| ||||||||||    
T  28703400 gagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaagctaatatcactggaccaacccaagtgggtt 28703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 602
Target Start/End: Complemental strand, 29563980 - 29563920
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacac-tctaggtctcaagtcaataccac 602  Q
    |||||||||||||||||||| || | ||||||||||| || || ||||||| |||||||||    
T  29563980 gagagaatcgaacctgagacttcgaggagaagcacacttccagatctcaagccaataccac 29563920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 623
Target Start/End: Original strand, 34622567 - 34622599
Alignment:
Q  591 agtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||||||| |||||||||||    
T  34622567 agtcaataccactagaccaacccaagtgggttt 34622599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 544 - 623
Target Start/End: Complemental strand, 35710470 - 35710390
Alignment:
Q  544 agagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    |||||||||||| ||||||||||||||| | ||||||| || ||||||||||||| |||| ||| ||||||||||||||||    
T  35710470 agagaatcgaacatgagacctcaaagaggaacacactcctaagtctcaagtcaatcccaccagatcaactcaagtgggttt 35710390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 543 - 625
Target Start/End: Complemental strand, 3001459 - 3001376
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtttta 625  Q
    |||| |||||||||||||| ||||| ||| ||||||||| ||| |||||||||||||||||||| ||||| |||||| ||||||    
T  3001459 gagataatcgaacctgagatctcaaggaggagcacactcctagatctcaagtcaataccactaggccaacccaagtgagtttta 3001376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 547 - 622
Target Start/End: Original strand, 12994376 - 12994452
Alignment:
Q  547 gaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||| |||||||| || ||| |||||||||  ||||| |||||||||||||||||||||||||||| |||||    
T  12994376 gaatcgaacttgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaagcgggtt 12994452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 622
Target Start/End: Complemental strand, 19244189 - 19244109
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||||    ||| |||||||||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  19244189 gagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaacccaagtgggtt 19244109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 623
Target Start/End: Original strand, 4060210 - 4060291
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||||| ||  | |||||||||||||| |||| ||||  |||||||||||| ||||| |||||||||||    
T  4060210 gagagaatcgaacctgagatcttgaggagaagcacactctcaggtttcaaaccaataccactaggccaacccaagtgggttt 4060291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 531 - 623
Target Start/End: Complemental strand, 29503363 - 29503270
Alignment:
Q  531 taaattgacactgagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||| | ||||||||||||||||||||  | ||| |||||||| | ||||| |||  |||||||||||| ||||| |||||||||||    
T  29503363 taaattgacaccgggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggttt 29503270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 40416386 - 40416466
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||||||||||||||| || ||| |||| ||||  ||||  ||||||||||||||||| ||||| ||||||||||    
T  40416386 gagagaatcgaacctgagaccttaaggaggagcatactcccaggttccaagtcaataccactaggccaacccaagtgggtt 40416466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 545 - 623
Target Start/End: Complemental strand, 37480153 - 37480074
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||||||  | ||| |||||||||| ||||| |||| ||||||||| || ||||| |||||||||||    
T  37480153 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggttt 37480074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 545 - 623
Target Start/End: Complemental strand, 39715070 - 39714991
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||||||| | ||| |||||||| | ||||| |||||||||||||| |  ||||| |||||||||||    
T  39715070 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggttt 39714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 622
Target Start/End: Original strand, 42327392 - 42327471
Alignment:
Q  544 agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  42327392 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 530 - 582
Target Start/End: Complemental strand, 33582067 - 33582014
Alignment:
Q  530 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct 582  Q
    ||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||    
T  33582067 ctaaattgacattagagagaatcgaacctgagacctcaaggaggagcacactct 33582014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 622
Target Start/End: Original strand, 5147719 - 5147755
Alignment:
Q  586 tctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||||||||||||||||||| ||||||||||    
T  5147719 tctcaagtcaataccactagaccaacccaagtgggtt 5147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 622
Target Start/End: Complemental strand, 42860424 - 42860348
Alignment:
Q  547 gaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||| ||||||||| | ||| |||||||||  |||||||||||||||| ||| || ||||||||||| ||||    
T  42860424 gaatcgaacttgagacctcgaggaggagcacactcccaggtctcaagtcaatatcaccaggccaactcaagtaggtt 42860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 545 - 611
Target Start/End: Complemental strand, 21213847 - 21213780
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaac 611  Q
    ||||||||||||||||||||||| ||| | |||||| | ||||| |||| ||||||||| ||||||||    
T  21213847 gagaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaac 21213780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 622
Target Start/End: Complemental strand, 28846766 - 28846691
Alignment:
Q  548 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||| || | ||| |||||||||  ||||| |||||||||||||||||| ||||  |||||||||    
T  28846766 aatcgaacctgagacatcgaggaggagcacactcccaggtcccaagtcaataccactagatcaacctaagtgggtt 28846691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 623
Target Start/End: Complemental strand, 19322848 - 19322767
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||| |||| |||||||  ||||| |||||||||  ||||| |||  ||||||||||||| |||| |||||||||||    
T  19322848 gagagaatcaaaccagagaccttgaagaggagcacactcccaggtcccaaaccaataccactagatcaacccaagtgggttt 19322767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 623
Target Start/End: Original strand, 34041588 - 34041665
Alignment:
Q  547 gaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||| ||||||||||||  | ||| |||||||||| || ||  |||||||||||||||| ||||| |||||||||||    
T  34041588 gaatcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggttt 34041665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 622
Target Start/End: Complemental strand, 13803575 - 13803495
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||| |||||||||||||||||  | ||| |||||||| ||| |||||||| ||||| ||||||| |||| ||| ||||||    
T  13803575 gagataatcgaacctgagaccttgaggaggagcacactcctaagtctcaagccaatatcactagatcaacccaaatgggtt 13803495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 623
Target Start/End: Original strand, 30808644 - 30808724
Alignment:
Q  544 agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||| |||||||||  | ||| |||| | ||| |||||||||| ||||| ||| |||||||| |||||||||||    
T  30808644 agagaatcgaaactgagaccttgaggaggagcatattctcaggtctcaagccaatatcaccagaccaacccaagtgggttt 30808724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 622
Target Start/End: Complemental strand, 35916122 - 35916086
Alignment:
Q  586 tctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  35916122 tctcaagtcaataccaccagaccaacccaagtgggtt 35916086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 623
Target Start/End: Original strand, 38854463 - 38854539
Alignment:
Q  548 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    |||||||||||||||||  | |||| | ||||||| |||||||||||||| |||||||  ||||| ||| |||||||    
T  38854463 aatcgaacctgagaccttgaggagaggtacactctcaggtctcaagtcaaaaccactaagccaacacaaatgggttt 38854539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 567
Target Start/End: Complemental strand, 39765029 - 39764989
Alignment:
Q  528 agctaaattgacact-gagagaatcgaacctgagacctcaa 567  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  39765029 agctaaattgacactagagggaatcgaacctgagacctcaa 39764989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 620
Target Start/End: Complemental strand, 3624673 - 3624582
Alignment:
Q  530 ctaaattgacactgagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtggg 620  Q
    |||||||||| | ||||||||||||||||||||||  ||||| |||||||| | ||||| |||| |||||||||||| ||||| ||||||||    
T  3624673 ctaaattgacccggagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 3624582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 622
Target Start/End: Complemental strand, 968442 - 968362
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||||| | ||| |||||||| | ||||| |||| ||||||||| || ||||||||||||||||    
T  968442 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 623
Target Start/End: Original strand, 19703472 - 19703564
Alignment:
Q  533 aattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    |||||||||| | ||||||||||||||||||||  | ||| |||||||||| ||||| |||| |||||||||||| ||||| |||||||||||    
T  19703472 aattgacactagggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggttt 19703564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 623
Target Start/End: Complemental strand, 16852418 - 16852339
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||||||| | ||| |||||||||  ||||| |||| |||||||||||| ||||| |||||||||||    
T  16852418 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 16852339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 622
Target Start/End: Complemental strand, 18540378 - 18540298
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||||  | |||||| ||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  18540378 gagagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 18540298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 623
Target Start/End: Complemental strand, 8485079 - 8484998
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||  ||||||||||||||| |||||||||  ||||| ||||  |||||||| || ||||| |||||||||||    
T  8485079 gagagaatcgaaaatgagacctcaaagaggagcacactcacaggtcccaagcaaataccaccaggccaacccaagtgggttt 8484998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 624
Target Start/End: Original strand, 17727447 - 17727504
Alignment:
Q  568 agagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 624  Q
    |||| |||||||||| |||||||||||||| ||||| |||||||| ||||||||||||    
T  17727447 agaggagcacactctgaggtctcaagtcaacaccacgagaccaacccaagtgggtttt 17727504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 545 - 611
Target Start/End: Original strand, 18546360 - 18546427
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaac 611  Q
    ||||||||||||||||||||| | ||| ||||  |||| ||||| ||| |||||||||||||||||||    
T  18546360 gagaatcgaacctgagacctcgaggaggagcatgctctcaggtcccaaatcaataccactagaccaac 18546427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 625
Target Start/End: Original strand, 34966851 - 34966929
Alignment:
Q  548 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttta 625  Q
    |||| ||| ||||||||| ||||| |||||||||  | |||||||| ||||||||  |||||||||||||||| |||||    
T  34966851 aatcaaacttgagacctcgaagagtagcacactcccaagtctcaagccaataccatcagaccaactcaagtggatttta 34966929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 623
Target Start/End: Original strand, 35641897 - 35641978
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    |||||||||||||||||||| || | ||| |||||||| | |  ||||||| | ||||||| |||||||| |||||||||||    
T  35641897 gagagaatcgaacctgagacatcgaggaggagcacactcccaaatctcaagccgataccaccagaccaacccaagtgggttt 35641978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 33549184 - 33549102
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtttt 624  Q
    ||||||||||||||||||||||| | ||| |||||||| | ||||| |||| ||||||||| |||||||| ||||||||||||    
T  33549184 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtttt 33549102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 530 - 611
Target Start/End: Complemental strand, 3715546 - 3715463
Alignment:
Q  530 ctaaattgacactg-agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaac 611  Q
    |||||||||||||| |||||||||||| ||||||||| | |||||||| ||| | || |||||||||||||||||||| |||||    
T  3715546 ctaaattgacactggagagaatcgaacttgagacctcgacgagaagcatactcccagatctcaagtcaataccactagcccaac 3715463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 346608 - 346551
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccac 602  Q
    ||||||||||| ||||||||| | ||||||||||||| ||||| ||||||||||||||    
T  346608 gagaatcgaacatgagacctcgaggagaagcacactccaggtcccaagtcaataccac 346551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 623
Target Start/End: Original strand, 12234489 - 12234584
Alignment:
Q  530 ctaaattgacactg-agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    |||||||||||||| |||||||||||||||||||||| |   | |||||||| | ||||| |||||||||||||| || |||||  ||||||||||    
T  12234489 ctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggccaacctaagtgggttt 12234584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 622
Target Start/End: Complemental strand, 14558053 - 14557962
Alignment:
Q  532 aaattgacactgagagaatcgaacctgagacctcaaagagaagcacac-tctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||| | |||||||||||||||||||   | ||| ||||||| || ||||| |||| ||| ||||| |||||||| ||||||||||    
T  14558053 aaattgacaccgggagaatcgaacctgagacccggaggaggagcacacttccaggtcccaagccaacaccaccagaccaacccaagtgggtt 14557962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 619
Target Start/End: Complemental strand, 4105131 - 4105051
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaata---ccactagaccaactcaagtgg 619  Q
    |||| |||||||||||||| || || ||| ||||||||| ||||| ||||| |||||   |||||||||||||||||||||    
T  4105131 gagaaaatcgaacctgagatcttaaggaggagcacactcctaggtttcaagccaataataccactagaccaactcaagtgg 4105051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 588 - 622
Target Start/End: Original strand, 22995153 - 22995187
Alignment:
Q  588 tcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||| |||||||||||||||||||    
T  22995153 tcaagtcaataccaccagaccaactcaagtgggtt 22995187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 588 - 622
Target Start/End: Complemental strand, 23793247 - 23793213
Alignment:
Q  588 tcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||| |||||||||||||||||||    
T  23793247 tcaagtcaataccaccagaccaactcaagtgggtt 23793213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 622
Target Start/End: Complemental strand, 32439879 - 32439805
Alignment:
Q  549 atcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||| ||||||||| |||||||||||||| | ||||  |||||||||| ||  | |||||||||||||||||    
T  32439879 atcgaacttgagacctcgaagagaagcacactttcaggttccaagtcaatatcatcataccaactcaagtgggtt 32439805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 623
Target Start/End: Original strand, 12188299 - 12188380
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||| ||| ||||  | ||| |||||||||  ||||| |||| |||||||||||| ||||| |||||||||||    
T  12188299 gagagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 12188380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 602
Target Start/End: Complemental strand, 6385942 - 6385882
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccac 602  Q
    |||||||||||||||||||||| || ||| |||||| | | ||||| ||||||||||||||    
T  6385942 gagagaatcgaacctgagaccttaaggaggagcacagtcccaggtcccaagtcaataccac 6385882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 622
Target Start/End: Complemental strand, 11423658 - 11423566
Alignment:
Q  532 aaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||||| ||| |||||||||||||||||| | |||||||| ||||  |  || |||||||||||||| |||||| | |||| |||||    
T  11423658 aaattgacactggagaaaatcgaacctgagacctcgaggagaagcatactcccaaatcccaagtcaataccaccagaccagcccaagcgggtt 11423566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 588 - 620
Target Start/End: Original strand, 22995077 - 22995109
Alignment:
Q  588 tcaagtcaataccactagaccaactcaagtggg 620  Q
    ||||||||||||||| |||||||||||||||||    
T  22995077 tcaagtcaataccaccagaccaactcaagtggg 22995109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 588 - 620
Target Start/End: Complemental strand, 23793323 - 23793291
Alignment:
Q  588 tcaagtcaataccactagaccaactcaagtggg 620  Q
    ||||||||||||||| |||||||||||||||||    
T  23793323 tcaagtcaataccaccagaccaactcaagtggg 23793291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 616
Target Start/End: Complemental strand, 34444881 - 34444809
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaag 616  Q
    ||||||||||||||||||||    ||| |||||||||| ||||| |||||||||||||| || ||||| ||||    
T  34444881 gagaatcgaacctgagaccttggggaggagcacactctaaggtcccaagtcaataccaccaggccaacccaag 34444809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 15319 - 15399
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||||| | ||| |||||||| | ||||| |||| ||||||||| |||||||| ||||||||||    
T  15319 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 618
Target Start/End: Complemental strand, 9224855 - 9224779
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 618  Q
    ||||||||||||||||||||||||| |||||||| ||||| || ||||||  ||||||||| |||||||| ||||||    
T  9224855 gagagaatcgaacctgagacctcaaggagaagcatactctcagatctcaaagcaataccaccagaccaacccaagtg 9224779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 618
Target Start/End: Original strand, 14787332 - 14787408
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 618  Q
    ||||||||||||||||| ||||  | ||||| |||||||| |||||||||||||||||||||||  |||||||||||    
T  14787332 gagagaatcgaacctgacaccttgaggagaaacacactctcaggtctcaagtcaataccactaggtcaactcaagtg 14787408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 543 - 625
Target Start/End: Complemental strand, 51814574 - 51814491
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttta 625  Q
    ||||||||||||||||||||||  | ||| |||||||||| || ||||||||||||||||  || ||||| |||||||||||||    
T  51814574 gagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggtttta 51814491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 531 - 622
Target Start/End: Complemental strand, 2220065 - 2219972
Alignment:
Q  531 taaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||| || |||||||||||||||||||||| | |||||||||||| | ||||  |||| ||||||||| ||| |||| ||||||||||    
T  2220065 taaattgacattggagagaatcgaacctgagacctcgaggagaagcacactttcaggttccaagccaataccaccagaacaacccaagtgggtt 2219972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 624
Target Start/End: Complemental strand, 25297850 - 25297770
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 624  Q
    ||||||| ||||| ||||||| | ||| |||||||||| || ||  |||||||||||||||||||||| ||||||||||||    
T  25297850 gagaatcaaacctcagacctcgaggaggagcacactctcagatcctaagtcaataccactagaccaacccaagtgggtttt 25297770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 16138143 - 16138210
Alignment:
Q  282 cttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgc 349  Q
    ||||||||||| || |||||||||||||||||||| || || ||||||| ||| |||||| |||||||    
T  16138143 cttttcttcaagtgagtgtgccatacattttttatttcattgtctgttcttccaggtaattttgctgc 16138210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 618
Target Start/End: Original strand, 17745238 - 17745328
Alignment:
Q  530 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 618  Q
    ||||||||||||  ||||||||||||| ||||||||| | ||| ||||||| || ||||| |||| |||||||||||| ||||| ||||||    
T  17745238 ctaaattgacaccagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaataccactaggccaacccaagtg 17745328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 622
Target Start/End: Complemental strand, 50901675 - 50901581
Alignment:
Q  530 ctaaattgacactgagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaa-taccactagaccaactcaagtgggtt 622  Q
    |||||||| ||||||||||||||||  ||||||||| | ||| |||||||| | ||||| |||| ||| ||||||||| ||||| ||||||||||    
T  50901675 ctaaattggcactgagagaatcgaatttgagacctcgaggaggagcacactaccaggtcccaagccaattaccactaggccaacccaagtgggtt 50901581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 623
Target Start/End: Original strand, 34460945 - 34460986
Alignment:
Q  582 taggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  34460945 taggtctcaagtcaataccactaagccaactcaagtgggttt 34460986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 16127053 - 16127120
Alignment:
Q  282 cttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgc 349  Q
    |||||||||||||| |||||||| | ||||||||| || || ||||||| ||| |||||| |||||||    
T  16127053 cttttcttcaaatgagtgtgccacatattttttatttcattgtctgttcttccaggtaattttgctgc 16127120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 33731163 - 33731230
Alignment:
Q  285 ttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgcaat 352  Q
    ||||||||||| |||||||| ||||||||||| || ||||| |||| ||| |||| | ||||||||||    
T  33731163 ttcttcaaatgcgtgtgccacacattttttatttcattatccgttcttcctggtagttttgctgcaat 33731230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 622
Target Start/End: Original strand, 38978967 - 38979018
Alignment:
Q  572 aagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||| ||||||    
T  38978967 aagcacactcctaggtctcaagtcaataccactaggccaacccaaatgggtt 38979018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 622
Target Start/End: Original strand, 19528325 - 19528403
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||  | ||| ||||||||| ||| || |||| ||||||||| || ||||| ||||||||||    
T  19528325 gagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 625
Target Start/End: Complemental strand, 29817746 - 29817672
Alignment:
Q  552 gaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttta 625  Q
    |||||||||| ||  ||||| |||||||||| |||||||||||||||| ||| || ||||| |||||| ||||||    
T  29817746 gaacctgagaacttgaagaggagcacactctcaggtctcaagtcaatatcaccaggccaacccaagtgagtttta 29817672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 623
Target Start/End: Complemental strand, 40257476 - 40257398
Alignment:
Q  546 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||| |||| ||||||||| | ||| |||||||||  |||||||||| ||||||||| || ||||| |||||||||||    
T  40257476 agaattgaacttgagacctcgaggaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggttt 40257398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 604
Target Start/End: Complemental strand, 50920034 - 50919972
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccacta 604  Q
    ||||||||||||||||| |||| || ||  |||||||||| |||| |||||||||||||||||    
T  50920034 gagagaatcgaacctgaaaccttaaggatgagcacactctcaggtttcaagtcaataccacta 50919972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 52029935 - 52029993
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccac 602  Q
    ||||||||||||||||||||  |  || ||||||||| |||||||||||||||||||||    
T  52029935 gagaatcgaacctgagaccttgagaaggagcacactcctaggtctcaagtcaataccac 52029993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 623
Target Start/End: Original strand, 8177178 - 8177259
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||||| ||||  | ||| |||||||||  || || |||| |||||||||||| ||||||||| |||||||    
T  8177178 gagagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaataccactaggccaactcaaatgggttt 8177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 622
Target Start/End: Original strand, 11068826 - 11068919
Alignment:
Q  531 taaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactctagg-tctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||| ||||||| ||| |||||  ||||||||| |||||||||  || || |||||||||||||| ||| |||| ||| ||||||    
T  11068826 taaattgacactggagagaattgaatctgaggtctcaaagaggagcacactcctggatcccaagtcaataccaccagatcaacccaaatgggtt 11068919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 623
Target Start/End: Complemental strand, 36371550 - 36371469
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||||| ||||||  | ||| |||||||||  ||||  |||| |||||||||||| ||||| |||||||||||    
T  36371550 gagagaatcgaacctcagaccttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggttt 36371469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 9165191 - 9165271
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||| ||||||||||| |  | ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  9165191 gagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 619
Target Start/End: Original strand, 15786317 - 15786393
Alignment:
Q  544 agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgg 619  Q
    |||||||||||||||||||||  | ||| |||||||| | || || |||| |||||| ||||||||||| |||||||    
T  15786317 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatactactagaccaacccaagtgg 15786393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 602
Target Start/End: Complemental strand, 28411410 - 28411350
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccac 602  Q
    |||||||| ||| |||||||||||||||| |||||||||| |  || ||||||||||||||    
T  28411410 gagagaattgaatctgagacctcaaagaggagcacactctcatatcccaagtcaataccac 28411350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 622
Target Start/End: Complemental strand, 44961857 - 44961765
Alignment:
Q  532 aaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||| |||||||||||||||||||||   | ||| ||||||||| ||  |||||||  ||||||||  ||||||| ||||||||||    
T  44961857 aaattgacactagagagaatcgaacctgagaccctgaggaggagcacactcttaaatctcaagctaataccacctgaccaacccaagtgggtt 44961765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 622
Target Start/End: Complemental strand, 47044810 - 47044717
Alignment:
Q  530 ctaaattgacactgagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||||| ||| ||||||||||||||||||||| | ||| |||| ||||| || || |||||||||||||| || ||||  ||||||||||    
T  47044810 ctaaattgacgctgggagaatcgaacctgagacctcgaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtt 47044717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 37109347 - 37109427
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  37109347 gagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 623
Target Start/End: Original strand, 21660126 - 21660221
Alignment:
Q  530 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||| |||| |||||||| ||||||||| | ||  |||||||||  || ||||||||||||||||| |||||||| ||||| |||||    
T  21660126 ctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggttt 21660221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 623
Target Start/End: Original strand, 21668890 - 21668985
Alignment:
Q  530 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||| |||| |||||||| ||||||||| | ||  |||||||||  || ||||||||||||||||| |||||||| ||||| |||||    
T  21668890 ctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggttt 21668985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 622
Target Start/End: Complemental strand, 46545805 - 46545711
Alignment:
Q  530 ctaaattgaca-ctgagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||| | |||| ||||||| |||||| ||  | ||| |||||||||| |||||||||| |||||||||||| ||||| ||||||||||    
T  46545805 ctaaattgacatcagagaaaatcgaatctgagatcttgaggaggagcacactctcaggtctcaagccaataccactaggccaacccaagtgggtt 46545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 618
Target Start/End: Complemental strand, 13901819 - 13901746
Alignment:
Q  546 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 618  Q
    ||||| |||| ||||||||||| ||| | |||||||  |||||||||| |||||||||||||||||| ||||||    
T  13901819 agaattgaacttgagacctcaaggaggaacacactcccaggtctcaagccaataccactagaccaacccaagtg 13901746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 601
Target Start/End: Complemental strand, 19112986 - 19112929
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaatacca 601  Q
    ||||||||||||||| | ||| ||||| ||||||||| ||||||||||||||||||||    
T  19112986 gagaatcgaacctgataactcgaagaggagcacactcctaggtctcaagtcaatacca 19112929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 619
Target Start/End: Original strand, 52254400 - 52254477
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgg 619  Q
    ||||||||| ||||||| ||||||| ||| |||||||||| |  || |||||||||||||  ||||||||||||||||    
T  52254400 gagagaatctaacctgaaacctcaaggaggagcacactctcatatcccaagtcaataccatcagaccaactcaagtgg 52254477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 622
Target Start/End: Original strand, 3780657 - 3780736
Alignment:
Q  544 agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||| |||||| |||||||||  ||||| | ||| | |||||||||||||||||||| ||||||| || ||||||||    
T  3780657 agagaattgaacctaagacctcaagaagaagaatactttcaggtctcaagtcaataccaccagaccaattctagtgggtt 3780736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 623
Target Start/End: Original strand, 7949436 - 7949531
Alignment:
Q  530 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 623  Q
    ||||||||||||  ||||||||||||||||||||||  | ||| |||||||| | ||||| |||| ||||||| |||| ||| | |||||||||||    
T  7949436 ctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccgctaggccagcccaagtgggttt 7949531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 618
Target Start/End: Original strand, 43623441 - 43623516
Alignment:
Q  544 agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtg 618  Q
    ||||||||||||||||||| |||| ||| |||||||| |  | ||||||||||||| |||||||| ||| ||||||    
T  43623441 agagaatcgaacctgagacttcaaggaggagcacactccctgatctcaagtcaatatcactagactaacccaagtg 43623516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 615
Target Start/End: Original strand, 306306 - 306379
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaa 615  Q
    |||| ||||||| ||||||| | |||||| | |||||||| || || ||| |||||||||||||||||||||||    
T  306306 gagaaaatcgaatctgagactttaaagaggatcacactctcagatcccaaatcaataccactagaccaactcaa 306379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 619
Target Start/End: Original strand, 7292794 - 7292871
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgg 619  Q
    |||||||||||||||||||| |  | ||| |||||||||  ||||  |||| |||||||||||||||||| |||||||    
T  7292794 gagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgg 7292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 622
Target Start/End: Original strand, 19229206 - 19229283
Alignment:
Q  545 gagaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||||||||||| | ||| |||||| |||| ||| || | ||||||||| || ||||| ||| ||||||    
T  19229206 gagaatcgaacctgagacctcgaggaggagcacattctaagtcccaggccaataccaccaggccaacccaaatgggtt 19229283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 582
Target Start/End: Original strand, 47386773 - 47386826
Alignment:
Q  530 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct 582  Q
    ||||||||||||| |||||||| ||||||||||||||||  |||||| ||||||    
T  47386773 ctaaattgacactagagagaattgaacctgagacctcaagaagaagcgcactct 47386826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 622
Target Start/End: Complemental strand, 51948573 - 51948480
Alignment:
Q  531 taaattgacactg-agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||||| ||||||| |||||||||||||| | |||  ||||||| |||| || ||||||||||| || ||  |||| ||||||||||    
T  51948573 taaattgacactggagagaattgaacctgagacctcgaggaggggcacactcctagatcccaagtcaatactaccaggacaacccaagtgggtt 51948480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 1730485 - 1730565
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||| ||| ||||||| |  ||||| |||||||||| ||||| |||| ||||||||||||  |||| ||||||||||    
T  1730485 gagagaatagaatctgagactttgaagaggagcacactctcaggtcccaagccaataccactaggtcaacccaagtgggtt 1730565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 622
Target Start/End: Complemental strand, 8306577 - 8306485
Alignment:
Q  532 aaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    ||||||||||| ||||||||||||| | |||| || | ||| |||||||||  |||||||||| | || |||  |||||||||||||||||||    
T  8306577 aaattgacactagagagaatcgaacttaagacttcgaggaggagcacactcccaggtctcaagccgatgccaacagaccaactcaagtgggtt 8306485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 611
Target Start/End: Original strand, 30557267 - 30557335
Alignment:
Q  544 agagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaac 611  Q
    |||||||||||| |||| |||| || || ||||||||| || ||| |||||||||||||| ||||||||    
T  30557267 agagaatcgaacatgagccctcgaaaaggagcacactcctacgtcccaagtcaataccaccagaccaac 30557335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 41629 - 41709
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||||||| |||||||||||||| | ||| |||| ||||| || ||||||| |||||||||||| ||||| ||||||||||    
T  41629 gagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggccaacccaagtgggtt 41709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 622
Target Start/End: Complemental strand, 24133 - 24053
Alignment:
Q  543 gagagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 622  Q
    |||| |||||||||||| || || ||||| ||||||||| || ||| ||||||||||||| ||| ||||| ||||||||||    
T  24133 gagataatcgaacctgacacttcgaagaggagcacactcctaagtcccaagtcaataccattaggccaacccaagtgggtt 24053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 611
Target Start/End: Original strand, 162991 - 163074
Alignment:
Q  530 ctaaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaac 611  Q
    |||||||||||| | |||||||||||||| |||||| |  ||| |||||||||| |||||  ||||||| ||||||||||||||    
T  162991 ctaaattgacaccggagagaatcgaacctcagaccttatggaggagcacactctcaggtcataagtcaaaaccactagaccaac 163074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 531 - 582
Target Start/End: Complemental strand, 49399 - 49347
Alignment:
Q  531 taaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactct 582  Q
    ||||||||||| | |||||||||||||||| ||||| ||||| ||||||||||    
T  49399 taaattgacaccggagagaatcgaacctgatacctcgaagaggagcacactct 49347  T

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