View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_low_31 (Length: 218)
Name: NF16808_low_31
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_low_31 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 43916134 - 43915930
Alignment:
| Q |
15 |
aatcactccacaattcattgcatatataattgtatatgtgattcttccaaaaattcattgcagagaaacatttttaactgtcataagttttatggaataa |
114 |
Q |
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| T |
43916134 |
aatcactccacaattcattgcatatataattgtatatgtgattcttccaaaaattcattgcagagaaacatttttaactgtcataagttttatggaataa |
43916035 |
T |
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| Q |
115 |
aaattaaaaccaacattttattcttatttatcaggatttgaactgtataccttttactctttacatttttt-atgtctcatctcaatcaaatgaactaac |
213 |
Q |
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| T |
43916034 |
aaattaaaaccaacattttattcttatttaccaggatttgaactgtgtaccttttactctttacattttttaatctctcatctcaatcaaatgaactaac |
43915935 |
T |
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| Q |
214 |
catct |
218 |
Q |
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||||| |
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| T |
43915934 |
catct |
43915930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 43915931 - 43915883
Alignment:
| Q |
171 |
ctctttacatttttta-tgtctcatctcaatcaaatgaactaaccatct |
218 |
Q |
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| T |
43915931 |
ctctttacattttttaatctctcatctcaatcaaatgaactaaccatct |
43915883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 43901318 - 43901276
Alignment:
| Q |
26 |
aattcattgcatatataattgtatatgtgattcttccaaaaat |
68 |
Q |
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| T |
43901318 |
aatttattgcatatataattgtacatgtgattcttcaaaaaat |
43901276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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