View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_low_4 (Length: 577)
Name: NF16808_low_4
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 20 - 577
Target Start/End: Complemental strand, 36458882 - 36458325
Alignment:
| Q |
20 |
taacgtggataatctcaagttgattcaactaggtcttactctcactgatgcaaatggtaacctacctggagatcatgcatacagctatatttgggaattt |
119 |
Q |
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| T |
36458882 |
taacgtggataatctcaacttgattcaactaggtcttactctcactgatgcaaatggtaacctacctggagatgttgcatacagctatatttgggaattt |
36458783 |
T |
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| Q |
120 |
aatttcaaagattttgacgtggagcgtgatcttcaaaatccagactctatcgaattgcttcgtcgtcaaggcgttgattttaaacgtaatttaatttacg |
219 |
Q |
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| T |
36458782 |
aatttcaaagattttgacgtggaccgtgatcttcaaaatccagactctatcgaattgcttcgtcgtcaaggcatcgattttaaacgtaatttaatttacg |
36458683 |
T |
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| Q |
220 |
gtgtcgattctctagaattttctaaattattcaggctgaagtctggactagtcaacagtggagtttcttgggttacatttcacagctcatatgattttgg |
319 |
Q |
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| T |
36458682 |
gtgtcgattctctagaatttgctaaattattcagactgaagtctggactagtcaacagtggagtttcttgggttacatttcacagctcatatgattttgg |
36458583 |
T |
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| Q |
320 |
gtatctagttaagattttgactcagaattacttaccgtctcgattggaggaattcttaagcatcttaac-gaaatattttggacggaatgtctatgatat |
418 |
Q |
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| T |
36458582 |
gtatctagttaagattttgactcagaattacttaccgtctcgattggaggaattcttaagcatcttaacacaaata-tttggacagaatgtctatgatat |
36458484 |
T |
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| Q |
419 |
gaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcggaaactctcatcaagccgcg |
518 |
Q |
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| T |
36458483 |
gaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcggtcggaaactctcatcaagccgcg |
36458384 |
T |
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| Q |
519 |
tcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaa |
577 |
Q |
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| T |
36458383 |
tcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaa |
36458325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 572
Target Start/End: Complemental strand, 40874816 - 40874742
Alignment:
| Q |
498 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttatttt |
572 |
Q |
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| T |
40874816 |
ggaaagtctcatcaagctggatcagatagtttgttgacgtggcatgcatttaagaaaatgatggatacttatttt |
40874742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 558
Target Start/End: Complemental strand, 40871718 - 40871658
Alignment:
| Q |
498 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatga |
558 |
Q |
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| T |
40871718 |
ggaaagtcgcatcaagctggatcagatagtttgttgacatggcatgcatttaagaaaatga |
40871658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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