View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_low_5 (Length: 543)
Name: NF16808_low_5
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Complemental strand, 49085653 - 49085139
Alignment:
| Q |
19 |
tgcatgaaattaggaaagaaagttactattttattgaagaaaacaaagatggattattataatcaaaattgagtaaataaacgaaccttggagacatctc |
118 |
Q |
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| T |
49085653 |
tgcatgaaattaggaaagaaagttactattttattgaagaaaacaaagatggattattataatcaaaattgagtaaataaacggaccttggagacatctc |
49085554 |
T |
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| Q |
119 |
gattaagctttctgacagtgtttgaaagcgaagcattctccttaagcaaattctcctaaaatatcaacctcaagtcaactcaaccaccgaaaacaaatac |
218 |
Q |
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| T |
49085553 |
gattaagctttctgacagtgtttgaaagcgaagcattctccttaagcaaattctcctaaaatatcaacctcaactcaactcaact--------caaccac |
49085462 |
T |
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| Q |
219 |
tgnnnnnnnntatgaaacagaaagagtatgggaaattaaaccttatcttgctctgcacggacgagattgtcggcggtttgagagagggaaacgtcgagag |
318 |
Q |
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| T |
49085461 |
tgaaaaaaa-tatgaaacagaaagagtatgggaaattaaaccttatcttgctctgcacggacgagattgtcggcggtttgagagagggaaacgtcgagag |
49085363 |
T |
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| Q |
319 |
actcaagctgagactgaagttccgctatgagttcatctttctcggcgatcttggcccgaagttccgatgactccaattcaagggctttgacacgtgtcga |
418 |
Q |
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| T |
49085362 |
actcaagctgagactgaagttccgctatgagttcatctttctcggcggtcttggcgcgaagttccgatgactccaattcaagggctttgacacgtgtcga |
49085263 |
T |
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| Q |
419 |
tagagcaatggatgtgattttgcgcgctacatcgagttgttcaaatggatctgacggtagtacttgcacgacatcctcgggaagatcgaagttcaaacct |
518 |
Q |
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| T |
49085262 |
tagagcaatggatgtgatcttgcgcgctacatcgagttgttcaaatggatctgacggtagtacttgcatgacatcctcgggaagatcgaagttcaaacct |
49085163 |
T |
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| Q |
519 |
cccgattctgccgtcatgttttct |
542 |
Q |
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| T |
49085162 |
cccgattctgccgtcatgttttct |
49085139 |
T |
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Back To:
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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 486
Target Start/End: Original strand, 6995663 - 6995744
Alignment:
| Q |
405 |
ttgacacgtgtcgatagagcaatggatgtgattttgcgcgctacatcgagttgttcaaatggatctgacggtagtacttgca |
486 |
Q |
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||||||||||| || || |||||||| ||||||||||| || ||||||||||| || || ||||| || ||||| ||||||| |
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| T |
6995663 |
ttgacacgtgttgaaagggcaatggaggtgattttgcgagccacatcgagttgctcgaaaggatcggatggtagaacttgca |
6995744 |
T |
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