View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16808_low_6 (Length: 540)
Name: NF16808_low_6
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 17 - 533
Target Start/End: Original strand, 54448909 - 54449425
Alignment:
| Q |
17 |
ctcactttcttgactatgacaataaaaaacagcataaggataaggcacagtgtgacaagccaccatctttggagctcgaatttccatcataatttctact |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54448909 |
ctcactttcttgactatgacaataaaaaacagcataaggataaggcacagtgtgacaagccaccatctttggagctcgaatttccatcataatttctact |
54449008 |
T |
|
| Q |
117 |
attgtgtaattttgaaaagtaacacttgatttggttttgtgcaaagttgcataaacttggatatcggattctgaaccaagaatgttttgtgtaaattcaa |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54449009 |
attgtgtaattttgaaaagtaacacttgatttggttttgtgcaaagttgcataaacttggatatcggattctgaaccaagaatgttttgtgtaaattcaa |
54449108 |
T |
|
| Q |
217 |
gcatagattctaaagaggtagcacaaaacttaacctctcctttgatgggtttgctttcacattcttttaaggtgctttccattgctatgccttgaggtga |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54449109 |
gcatagattctaaagaggtagcacaaaacttaacctctcctttgatgggtttgctttcacattcttttaaggtgctttccattgctatgccttgaggtga |
54449208 |
T |
|
| Q |
317 |
acctcgagagaaagagaagaattttagaagatatgagagttggtttgatgagaaaggaagtgattcagcttcttctttgggccataacttaggggaagtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54449209 |
acctcgagagaaagagaagaattttagaagatatgagagttggtttgatgagaaaggaagtgattcagcttcttctttgggccataacttaggggaagtt |
54449308 |
T |
|
| Q |
417 |
gatgggtctctcttaggaaaataaatttgcattatttttcctactttcaaatcttttaaagtgaagaataccattagtgaaggatcaatattatgattca |
516 |
Q |
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| T |
54449309 |
gatgggtctctcttaggaaaataaatttgcattatttttcctactttcaaatcttttaaagtgaagaataccattagtgaaggatcaatattatgattca |
54449408 |
T |
|
| Q |
517 |
tatgattatgatgatgt |
533 |
Q |
| |
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||||||||||||||||| |
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| T |
54449409 |
tatgattatgatgatgt |
54449425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 49755364 - 49754854
Alignment:
| Q |
18 |
tcactttcttgactatgacaataaaaaacagcataaggataaggcacagtgtgacaagccaccatctttggagctcgaatttccatcataatttctacta |
117 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||| |||||||| | | ||||||||||| |
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|
| T |
49755364 |
tcactttcttggccatgacaataaaaaacagcataagggtaaggcacagtgtgacaagccaccattttgggagctagaatttcctttagaatttctacta |
49755265 |
T |
|
| Q |
118 |
ttgtgtaattttgaaaagtaacacttgatttggttttgtgcaaagttgcataaacttggatatcggattctgaaccaagaatgttttgtgtaaattcaag |
217 |
Q |
| |
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| || |||||||| | |||||||||||| |||||||||||||||||||||||| ||||||| || ||| ||||||||||| |||||||||||||||||| |
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|
| T |
49755264 |
tagtataattttggagagtaacacttgacttggttttgtgcaaagttgcataaccttggatttcatattttgaaccaagaacgttttgtgtaaattcaag |
49755165 |
T |
|
| Q |
218 |
catagattctaaagaggtagcacaaaacttaacctctcctttgatgggtttgctttcacattcttttaaggtgctttccattgctatgccttgaggtgaa |
317 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||||||| |||| ||| ||| ||| || || ||||||||||| |
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|
| T |
49755164 |
catagattcaaaagaggtagcacataactttacctctcctttgatgggtttactctcacattctcttaaagtgtttttcatggccattgcttgaggtgaa |
49755065 |
T |
|
| Q |
318 |
cctcgagagaaagagaagaattttagaagatatgagagttggtttgatgagaaaggaagtgattcagcttcttctttgggccataacttaggggaagttg |
417 |
Q |
| |
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|| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||||| |||||||||||||||||||| |
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|
| T |
49755064 |
tcttgagagaaagagaagaatttgagaagatatgagagttggtttgatgaaaaaggaagtgattcagctttttgtttggaccataacttaggggaagttg |
49754965 |
T |
|
| Q |
418 |
atgggtctctcttaggaaaataaatttgcattatttttcctactttcaaatcttttaaagtgaagaataccattagtgaaggatcaatattatgattcat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
49754964 |
atgggtctctcttaggaaaataaatttgcattatgttccctactttcaaatctttcaaagtgaagaaaaccattagtgaaggatcaatattatgactcat |
49754865 |
T |
|
| Q |
518 |
atgattatgat |
528 |
Q |
| |
|
||||||||||| |
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|
| T |
49754864 |
atgattatgat |
49754854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 26208634 - 26208162
Alignment:
| Q |
18 |
tcactttcttgactatgacaataaaaaacagcataaggataaggcacagtgtgacaagccaccatctttggagctcgaatttccatcataatttctacta |
117 |
Q |
| |
|
||||||||||| ||||| ||||| || ||||||||||| ||||||| ||||||||| |||||||||||||||||| ||| ||| || |||||| || |
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|
| T |
26208634 |
tcactttcttggctatggcaatagaatacagcataagggtaaggcatagtgtgacatgccaccatctttggagctgaaatcctcataattttttctaata |
26208535 |
T |
|
| Q |
118 |
ttgtgtaattttgaaaagtaacacttgatttggttttgtgcaaagttgcataaacttggatatcggattctgaaccaagaatgttttgtgtaaattcaag |
217 |
Q |
| |
|
| || || || |||||||| ||||||||||||||| || ||||||||||||||| || ||| || ||||||||| |||| || || ||||| |
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|
| T |
26208534 |
tagtatagttctgaaaagtgacacttgatttggttaaatgtgaagttgcataaactttgagatcatttttaataccaagaatactttgagtgaaatcaag |
26208435 |
T |
|
| Q |
218 |
catagattctaaagaggtagcacaaaacttaacctctcctttgatgggtttgctttcacattcttttaaggtgctttccattgctatgccttgaggtgaa |
317 |
Q |
| |
|
||||||||||||||| || ||||| || || || |||||||||||||||||||| ||||||||| | | ||| | |||||||| || |||| || || |
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|
| T |
26208434 |
catagattctaaagaagtggcacagaatttcacttctcctttgatgggtttgctctcacattctgtaagggtatctaccattgctttggcttgtggagag |
26208335 |
T |
|
| Q |
318 |
cctcgagagaaagagaagaattttagaagatatgagagttggtttgatgagaaaggaagtgattcagcttcttctttgggccataacttaggggaagttg |
417 |
Q |
| |
|
|| |||| |||||||||| ||| |||||| || |||| ||| |||| ||||||||||| ||||||| ||| | ||||| |||||||||||||||| |
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|
| T |
26208334 |
tcttgagataaagagaagattttgagaagagttggaagtttgttcaatgaaaaaggaagtgaatcagctttgtctcttggccaaaacttaggggaagttg |
26208235 |
T |
|
| Q |
418 |
atgggtctctcttaggaaaataaatttgcattatttttcctactttcaaatcttttaaagtgaagaataccat |
490 |
Q |
| |
|
| |||| ||| || ||||||| |||||||||| |||| || ||||| || |||||||| |||||||| ||||| |
|
|
| T |
26208234 |
aagggtttcttttgggaaaattaatttgcattcttttcccaacttttaagtcttttaaggtgaagaacaccat |
26208162 |
T |
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