View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16808_low_7 (Length: 517)
Name: NF16808_low_7
Description: NF16808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16808_low_7 |
 | |
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| [»] scaffold0141 (2 HSPs) |
| | |
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| [»] scaffold0638 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 8429649 - 8429923
Alignment:
| Q |
1 |
catgttcaaagcttctgtttggtttttaatattggtgtagcagatatgcagaggacaaggctttaatgtgctgatgccagcgagcatttttgcaggactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8429649 |
catgttcaaagcttctgtttggtttttaatattggtgtagcagatatgcagaggacaaggctttaatgtgccgatgccagcgagcatttttgcaggactt |
8429748 |
T |
|
| Q |
101 |
catattgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatatggagttttgtacttgttatgggataatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
8429749 |
catattgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgttatgggataatta |
8429848 |
T |
|
| Q |
201 |
gcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8429849 |
gcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
8429923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 8449768 - 8449488
Alignment:
| Q |
1 |
catgttcaaagcttctgtttggtttttaatattggtgtagcagatatgcagaggacaaggctttaatgtgctgatgcc------agcgagcatttttgca |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| |
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|
| T |
8449768 |
catgttcaaagcttctgtttggtttttaatattggtgtagcagatatgcagaggacaaggctttaatgtgccggtgccggtgccagcgagcatttttgca |
8449669 |
T |
|
| Q |
95 |
ggacttcatattgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatatggagttttgtacttgttatggga |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
8449668 |
ggacttcatattgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgttaaggga |
8449569 |
T |
|
| Q |
195 |
taattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
8449568 |
taattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagccagaactattgtaacacaat |
8449488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 321 - 511
Target Start/End: Original strand, 8429969 - 8430159
Alignment:
| Q |
321 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcac |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8429969 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcac |
8430068 |
T |
|
| Q |
421 |
attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatattcttggacat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
8430069 |
attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatatttttggacat |
8430159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 321 - 511
Target Start/End: Complemental strand, 8449442 - 8449252
Alignment:
| Q |
321 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcac |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8449442 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttgttttcttcaaagctatgcac |
8449343 |
T |
|
| Q |
421 |
attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatattcttggacat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
8449342 |
attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatatttttggacat |
8449252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 472
Target Start/End: Complemental strand, 25973954 - 25973850
Alignment:
| Q |
369 |
aataataaaattcctttttctcacttcctttgttttcttcaaagctatgcacattgcaagcttaatct-ttgctttcatggagtttgagattacct-tta |
466 |
Q |
| |
|
||||||||| || | |||||||| || |||| | ||||||| |||| ||||||||||||||||| | | |||||||||||| | |||||||| ||| ||| |
|
|
| T |
25973954 |
aataataaattttccttttctcattttcttt-tcttcttcatagctttgcacattgcaagcttattttcttgctttcatggggattgagattgcctctta |
25973856 |
T |
|
| Q |
467 |
acaata |
472 |
Q |
| |
|
|||||| |
|
|
| T |
25973855 |
acaata |
25973850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 7898 - 7625
Alignment:
| Q |
1 |
catgttcaaagcttctgtttggtttttaatattggtgtagcagatatgcagaggacaaggctttaatgtgctgatgccagcgagcattttt-gcaggact |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||| |
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|
| T |
7898 |
catgttcaaagcttctgattggtttttaatattggtgtagcagatacgcagaggacaaggctttaatgtgccgatgc--gcgagcattttttgcaggact |
7801 |
T |
|
| Q |
100 |
tcatattgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatatggagttttgtacttgttatgggataatt |
199 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
7800 |
tcatactgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgttaagggataatt |
7701 |
T |
|
| Q |
200 |
agcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7700 |
agcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
7625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 321 - 511
Target Start/End: Complemental strand, 7579 - 7389
Alignment:
| Q |
321 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcac |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7579 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttgttttcttcaaagctatgcac |
7480 |
T |
|
| Q |
421 |
attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatattcttggacat |
511 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7479 |
attgcaagcttaatctttgctttaatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatatttttggacat |
7389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 6e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 321 - 463
Target Start/End: Complemental strand, 4238742 - 4238600
Alignment:
| Q |
321 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcac |
420 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4238742 |
cactctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaatctatgcac |
4238643 |
T |
|
| Q |
421 |
attgcaagcttaatctttgctttcatggagtttgagattacct |
463 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4238642 |
attgcaagcttaacctttgctttcatggagtttgagattacct |
4238600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 4238991 - 4238913
Alignment:
| Q |
192 |
ggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaac |
270 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||||| |||| ||||||||| ||||||| ||||| ||||||| |
|
|
| T |
4238991 |
ggataattagattgggatgcatatgttacttgtgtagcaagcaactatgtgaaactcaactagcttaaacggttgtaac |
4238913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 3750881 - 3750969
Alignment:
| Q |
83 |
agcatttttgcaggacttcatattgatgtttaaaa-ttatcaaggttattagaaagttttaata-atacagatagttgaaataggaaat |
169 |
Q |
| |
|
|||||||||| |||| |||| |||||||| |||| |||||||| |||||||||||||| | | ||| |||||||||||||| ||||| |
|
|
| T |
3750881 |
agcatttttgaaggatttcagattgatgtgtaaagcttatcaagtttattagaaagtttagagagatagagatagttgaaatatgaaat |
3750969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 44272624 - 44272572
Alignment:
| Q |
203 |
ttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagc |
255 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44272624 |
ttgagatgtatatgttacttgtgtagcaagtaactgtgtgaaacttaactagc |
44272572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 458
Target Start/End: Original strand, 14973383 - 14973490
Alignment:
| Q |
349 |
tgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcacattgcaagcttaatctttgctttcatgg |
448 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||| | |||| || | |||||| ||||||| ||||||| | ||||||||||| | | | ||||||||| |
|
|
| T |
14973383 |
tgtaatactcagattttgggaatagtaaaattccctcttcttacatactttgtcttcttcatagctatgta--ttgcaagcttattttctactttcatgg |
14973480 |
T |
|
| Q |
449 |
agtttgagat |
458 |
Q |
| |
|
|||||||||| |
|
|
| T |
14973481 |
agtttgagat |
14973490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 33894552 - 33894486
Alignment:
| Q |
195 |
taattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaac |
261 |
Q |
| |
|
||||||||||| | ||||||||||||| ||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
33894552 |
taattagcttgtattacatttgttacttgggtagcaagtaactgtttaaaacttaacttgcctaaac |
33894486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 432
Target Start/End: Original strand, 8564480 - 8564561
Alignment:
| Q |
351 |
taattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcacattgcaagctta |
432 |
Q |
| |
|
|||| |||| ||||| ||||||| ||||||||| ||| ||||| |||||| ||||| ||| ||||||||||||||| |||| |
|
|
| T |
8564480 |
taatacttacattttctgaataatgaaattccttgttcacactttctttgtcttctttaaatctatgcacattgcaatctta |
8564561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 463
Target Start/End: Complemental strand, 8051 - 7948
Alignment:
| Q |
359 |
agattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcacattgcaagcttaatctttgctttcatggagtttgagat |
458 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||||| | | |||| ||||| ||||| |||||||||| ||| || | || |||||||| |||||||||| |
|
|
| T |
8051 |
agattttgtgaataataaa-ttccttcttctcaccttccttgtcttctttaaagccatgcacattgtaagtctatttttcactttcatgaagtttgagat |
7953 |
T |
|
| Q |
459 |
tacct |
463 |
Q |
| |
|
||||| |
|
|
| T |
7952 |
tacct |
7948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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